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GFBio
schemas.ammod.de
Commits
48b06182
Commit
48b06182
authored
Feb 16, 2022
by
domenico.velotto
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moved file to exchange folder added README
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examples/metabarcoding/Metadata_collection_table_Biobank__Vers_f_Metabarcoding_2022-01-28_for_individual_samples.xlsx
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examples/metabarcoding/Metadata_collection_table_Biobank__Vers_f_Metabarcoding_2022-01-28_for_mixed_samples_updated.xlsx
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examples/metabarcoding/README.md
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# Documentation:
## Raw data:
Each trap is registered as a Device.
Each run of the trap between the start date and the end date results in a log file and a csv file
with the individual samples (columns) and the sequences found in the lab and their occurrence in the individual sample.
## Processed data:
*
laboratory.csv: metadata from the laboratory.
*
mapped.csv: registered sequences and their OTU mapping
*
species_list: all MOTUs found and their taxonomy.
## ToDo:
-
Link to the SRA archive in the raw data.
-
Fix lab metadata
-
Species list with URIs to taxonomic catalogue
-
Plant-pollinator relationship mapping
examples/metabarcoding/Pflanze-Insekt_Template_Sample_blank.xlsm
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examples/metabarcoding/
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Pflanze-Insekt_Template_Sample_blank.xlsm
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examples/metabarcoding/Template_taxonomy_data_10July2019.xlsx
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examples/metabarcoding/
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Template_taxonomy_data_10July2019.xlsx
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examples/metabarcoding/blank_MatTab__metabarcoding__7_.xlsx
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examples/metabarcoding/
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blank_MatTab__metabarcoding__7_.xlsx
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