Merge requests · loosolab

SCSA-integration, run_annotation wrapper

loosolab/software/annotate_by_marker_and_features!48 · created Jan 11, 2024 by Micha-Frederick Kessler dev
- Merged
updated Jan 11, 2024
Resolve "Increase test coverage from 75% to 80%"

loosolab/software/sc_framework!213 · created Jan 10, 2024 by Hendrik Schultheis Version 0.4 to main dev
CI/CD
- Merged
- 10
- Approved
updated Jan 27, 2024
Resolve "Pseudotime / Trajectory analysis Notebook"

loosolab/software/sc_framework!212 · created Jan 10, 2024 by Rene Wiegandt Version 0.4 to main dev
Feature request
- Merged
- 11
- Approved
updated Jan 26, 2024
Fix typos

loosolab/software/sc_framework!211 · created Jan 10, 2024 by Rene Wiegandt Version 0.4 to main dev
Bug
- Merged
- Approved
updated Jan 10, 2024
Add saving barcode in BAM file as default for starsolo run

loosolab/software/scRNAseq.preprocessing!27 · created Dec 20, 2023 by Rene Wiegandt dev
- Merged
- 1
- Approved
updated Feb 09, 2024
Update 162-marker-repo-integration

loosolab/software/sc_framework!210 · created Dec 20, 2023 by Micha-Frederick Kessler 162-marker-repo-integration
- Merged
updated Dec 20, 2023
Update SCSA-integration

loosolab/software/annotate_by_marker_and_features!47 · created Dec 18, 2023 by Micha-Frederick Kessler SCSA-integration
- Merged
updated Dec 18, 2023
Examples updated, Adjacent Disparity implemented, and refactoring

loosolab/software/annotate_by_marker_and_features!46 · created Dec 11, 2023 by Micha-Frederick Kessler
- Merged
updated Dec 11, 2023
Resolve "check_changes job fails on Runner KI-V0481"

loosolab/software/sc_framework!209 · created Dec 07, 2023 by Mette Bentsen Version 0.4 to main dev
Bug CI/CD
- Merged
- 1
- Approved
updated Jan 10, 2024
140 hackathon fatemeh

loosolab/software/sc_framework!208 · created Dec 06, 2023 by Fatemeh Khassafi 140-readthedocs-code-examples-ii
Hackathon
- Merged
- 2
- Approved
updated Feb 26, 2024
create example in_range()

loosolab/software/sc_framework!207 · created Dec 06, 2023 by Jannik Luebke 140-readthedocs-code-examples-ii
Hackathon
- Merged
- 11
- Approved
updated Apr 03, 2024
Resolve "Readthedocs code examples Clustering Re-clustering"

loosolab/software/sc_framework!206 · created Dec 06, 2023 by Sweta Talyan 140-readthedocs-code-examples-ii
Feature request Hackathon
- Merged
- 3
- Approved
updated Feb 26, 2024
Draft: 140 hackathon fatemeh

loosolab/software/sc_framework!205 · created Dec 06, 2023 by Fatemeh Khassafi 140-readthedocs-code-examples-ii
- Closed
updated Dec 06, 2023
Issue 140 hackathon vanessa plot venn

loosolab/software/sc_framework!204 · created Dec 06, 2023 by Vanessa Heger 140-readthedocs-code-examples-ii
Hackathon
- Merged
- 3
- Approved
updated Feb 26, 2024
Update to version 0.3

loosolab/software/sc_framework!203 · created Nov 29, 2023 by Rene Wiegandt Version 0.3 to main
- Merged
updated Nov 30, 2023
update Dockerfile

loosolab/software/loosolab-s3!15 · created Nov 28, 2023 by Philipp Goymann
updated Nov 28, 2023
add Dockerfile no root

loosolab/software/loosolab-s3!14 · created Nov 28, 2023 by Philipp Goymann
- Merged
updated Nov 28, 2023
Unstable branch

loosolab/container/igv!1 · created Nov 28, 2023 by Philipp Goymann
- Merged
updated Nov 28, 2023
Resolve "kwargs"

loosolab/software/sc_framework!202 · created Nov 28, 2023 by Mette Bentsen Version 0.3 to main dev
Feature request
- Merged
- 38
- Approved
updated Nov 30, 2023
updated atac notebooks and qc

loosolab/software/sc_framework!201 · created Nov 27, 2023 by Jan Detleffsen Version 0.3 to main dev
ATAC
- Merged
- 1
- Approved
updated Nov 29, 2023