Merge requests · loosolab

QC rework 6 of 11 checklist items completed

loosolab/software/sc_framework!55 · created Aug 16, 2022 by Hendrik Schultheis dev
- Merged
- 19
updated Oct 31, 2022
Modification in notebook 3 and adding informations for adata.uns[infoprocess]

loosolab/software/sc_framework!58 · created Sep 13, 2022 by guilherme.valente dev
- Merged
- 2
updated Oct 31, 2022
Added draft for batch correction and wrapper functions

loosolab/software/sc_framework!46 · created Jul 25, 2022 by Mette Bentsen dev
- Merged
- 40
- Approved
updated Oct 31, 2022
Update README.md

loosolab/software/loosolab-s3!4 · created Oct 26, 2022 by Philipp Goymann
- Merged
updated Oct 26, 2022
Update README.md

loosolab/software/loosolab-s3!3 · created Oct 26, 2022 by Philipp Goymann
- Merged
updated Oct 26, 2022
documentation of batch_correction

loosolab/software/sc_framework!59 · created Sep 20, 2022 by Fatemeh Khassafi dev
- Merged
- 10
- Approved
updated Sep 30, 2022
Updates of notebooks 3 & 4

loosolab/software/sc_framework!57 · created Sep 05, 2022 by Mette Bentsen qc_rework
- Merged
- 7
- Approved
updated Sep 13, 2022
scATAC: Annotation of features from adata and gtf

loosolab/software/sc_framework!20 · created Jun 29, 2022 by Mette Bentsen dev
- Merged
- 4
updated Sep 12, 2022
Feature_annotation_jan into annotation branch

loosolab/software/sc_framework!52 · created Aug 09, 2022 by Jan Detleffsen feature_annotation
- Merged
- 14
- Approved
updated Sep 08, 2022
Interactive quality filtering functionality

loosolab/software/sc_framework!56 · created Aug 22, 2022 by Mette Bentsen qc_rework
- Merged
- 65
- Approved
updated Sep 05, 2022
Adding LISI batch effect evaluation (Fix)

loosolab/software/sc_framework!54 · created Aug 10, 2022 by Rene Wiegandt batch_correction
- Merged
- 2
- Approved
updated Aug 11, 2022
Lint everything

loosolab/software/sc_framework!53 · created Aug 09, 2022 by Hendrik Schultheis dev
- Merged
- Approved
updated Aug 09, 2022
Batch correction overview plot

loosolab/software/sc_framework!40 · created Jul 19, 2022 by Hendrik Schultheis batch_correction
- Merged
- 9
- Approved
updated Aug 08, 2022
Added automatic gene labeling & reformatting of notebooks

loosolab/software/sc_framework!50 · created Aug 05, 2022 by Mette Bentsen dev
- Merged
- 21
- Approved
updated Aug 05, 2022
Defining best pc

loosolab/software/sc_framework!45 · created Jul 22, 2022 by guilherme.valente dev
- Merged
- 11
- Approved
updated Aug 05, 2022
Note 3: Functions to run_PCA

loosolab/software/sc_framework!43 · created Jul 21, 2022 by guilherme.valente dev
- Merged
- 56
- Approved
updated Aug 05, 2022
Function to check minimun requirements of anndata object

loosolab/software/sc_framework!44 · created Jul 21, 2022 by guilherme.valente dev
- Merged
- 27
- Approved
updated Aug 03, 2022
Added missing dependency

loosolab/container/r-splicing!6 · created Aug 02, 2022 by Rene Wiegandt
- Merged
updated Aug 02, 2022
Splitting of bam based on clusters

loosolab/software/sc_framework!16 · created Jun 28, 2022 by Mette Bentsen dev
- Merged
- 21
- Approved
updated Jul 28, 2022
Convert adata

loosolab/software/sc_framework!49 · created Jul 28, 2022 by Hendrik Schultheis dev
- Merged
- Approved
updated Jul 28, 2022