Merge requests · loosolab

Error building mnnpy for notebook testing

loosolab/software/sc_framework!70 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
force creation of env using mamba

loosolab/software/sc_framework!69 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
prevent creation of virtual env for notebook test

loosolab/software/sc_framework!68 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
Make sure conda is available for testing

loosolab/software/sc_framework!67 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
Added sctoolbox kernel before testing notebooks

loosolab/software/sc_framework!66 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
Dir tree integration

loosolab/software/sc_framework!65 · created Oct 31, 2022 by Jan Detleffsen dev
updated Nov 01, 2022
missing nbconvert for running notebooks

loosolab/software/sc_framework!64 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
Add tests for incoming merge requests

loosolab/software/sc_framework!63 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
Hackathon release

loosolab/software/sc_framework!62 · created Oct 31, 2022 by Hendrik Schultheis
updated Oct 31, 2022
Added test for notebooks for pushing to main

loosolab/software/sc_framework!61 · created Oct 31, 2022 by Mette Bentsen dev
- Merged
- Approved
updated Oct 31, 2022
Code for counting insertsize/fragmentsize from scATAC

loosolab/software/sc_framework!60 · created Oct 27, 2022 by Mette Bentsen dev
- Merged
- Approved
updated Nov 01, 2022
Update README.md

loosolab/software/loosolab-s3!4 · created Oct 26, 2022 by Philipp Goymann
- Merged
updated Oct 26, 2022
Update README.md

loosolab/software/loosolab-s3!3 · created Oct 26, 2022 by Philipp Goymann
- Merged
updated Oct 26, 2022
documentation of batch_correction

loosolab/software/sc_framework!59 · created Sep 20, 2022 by Fatemeh Khassafi dev
- Merged
- 10
- Approved
updated Sep 30, 2022
Modification in notebook 3 and adding informations for adata.uns[infoprocess]

loosolab/software/sc_framework!58 · created Sep 13, 2022 by guilherme.valente dev
- Merged
- 2
updated Oct 31, 2022
Updates of notebooks 3 & 4

loosolab/software/sc_framework!57 · created Sep 05, 2022 by Mette Bentsen qc_rework
- Merged
- 7
- Approved
updated Sep 13, 2022
Interactive quality filtering functionality

loosolab/software/sc_framework!56 · created Aug 22, 2022 by Mette Bentsen qc_rework
- Merged
- 65
- Approved
updated Sep 05, 2022
QC rework 6 of 11 checklist items completed

loosolab/software/sc_framework!55 · created Aug 16, 2022 by Hendrik Schultheis dev
- Merged
- 19
updated Oct 31, 2022
Adding LISI batch effect evaluation (Fix)

loosolab/software/sc_framework!54 · created Aug 10, 2022 by Rene Wiegandt batch_correction
- Merged
- 2
- Approved
updated Aug 11, 2022
Lint everything

loosolab/software/sc_framework!53 · created Aug 09, 2022 by Hendrik Schultheis dev
- Merged
- Approved
updated Aug 09, 2022