... and fixed indices

edc5f267 · Anna Lena R · cc4c9602 · edc5f267
Commit edc5f267 authored Oct 15, 2019 by Anna Lena R
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functions/phaseRetrieval/utilities/rescaleDefocusSeries.m functions/phaseRetrieval/utilities/rescaleDefocusSeries.m +4 -4

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--- a/functions/phaseRetrieval/utilities/rescaleDefocusSeries.m
+++ b/functions/phaseRetrieval/utilities/rescaleDefocusSeries.m
@@ -291,11 +291,11 @@ for imageIdx = idxMaxMagnification+direction:direction:idxMaxMagnification+direc
    else
        % align the cropped image to the reference using alignImages and dftregistration
        [~, shifts, rotAngleDegree, imFiltered] = alignImages(imScaled(...
-            settings.cutTop : size(imScaled,1)-settings.cutBottom ...
-            , settings.cutLeft : size(imScaled,2)-settings.cutRight) ...
+            settings.cutTop + 1: size(imScaled,1)-settings.cutBottom ...
+            , settings.cutLeft + 1 : size(imScaled,2)-settings.cutRight) ...
            , imReference(...
-            settings.cutTop : size(imReference,1)-settings.cutBottom ...
-            , settings.cutLeft : size(imReference,2)-settings.cutRight) ...
+            settings.cutTop + 1 : size(imReference,1)-settings.cutBottom ...
+            , settings.cutLeft + 1 : size(imReference,2)-settings.cutRight) ...
            ,settings);
    end