Commit edc5f267 authored by Anna Lena R's avatar Anna Lena R
Browse files

... and fixed indices

parent cc4c9602
Pipeline #111354 passed with stage
in 1 minute and 46 seconds
...@@ -291,11 +291,11 @@ for imageIdx = idxMaxMagnification+direction:direction:idxMaxMagnification+direc ...@@ -291,11 +291,11 @@ for imageIdx = idxMaxMagnification+direction:direction:idxMaxMagnification+direc
else else
% align the cropped image to the reference using alignImages and dftregistration % align the cropped image to the reference using alignImages and dftregistration
[~, shifts, rotAngleDegree, imFiltered] = alignImages(imScaled(... [~, shifts, rotAngleDegree, imFiltered] = alignImages(imScaled(...
settings.cutTop : size(imScaled,1)-settings.cutBottom ... settings.cutTop + 1: size(imScaled,1)-settings.cutBottom ...
, settings.cutLeft : size(imScaled,2)-settings.cutRight) ... , settings.cutLeft + 1 : size(imScaled,2)-settings.cutRight) ...
, imReference(... , imReference(...
settings.cutTop : size(imReference,1)-settings.cutBottom ... settings.cutTop + 1 : size(imReference,1)-settings.cutBottom ...
, settings.cutLeft : size(imReference,2)-settings.cutRight) ... , settings.cutLeft + 1 : size(imReference,2)-settings.cutRight) ...
,settings); ,settings);
end end
......
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