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Commit 7ed27775 authored by Joerg Buescher's avatar Joerg Buescher
Browse files

do full batch processing also for initial training to generate template...

do full batch processing also for initial training to generate template required for second training
parent 4d59d3fc
......@@ -128,11 +128,12 @@ process_batch <- function(nowfolder = "", parameters = list(), return_msd=FALSE)
save(metab, smpl, msd, prm, file = file.path(prm$batchdir, 'troubleshoot.RData') )
}
# do not proceed in case of initial training
if(prm$ml_type == 'mltrain_initial'){
print ('qqq_auto_integrate complete.')
return(NULL)
}
# must continue in order to generate manual_peakcheck_template and peakoverview.pdf required to prepare second training
# # do not proceed in case of initial training
# if(prm$ml_type == 'mltrain_initial'){
# print ('qqq_auto_integrate complete.')
# return(NULL)
# }
# subset peakdata (only non NA metabolites are returned)
......
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