Commit ce79a8fe authored by aditya.bhagwat's avatar aditya.bhagwat
Browse files

08_filter_efficient: keep default chunksize at 100000

parent dd0c0275
......@@ -76,7 +76,7 @@ doench2014 <- function(
# mclapply seems like best choice: fork on linux - execute serially on win
doench2016 <- function(
contextseqs,
chunksize = 100000,
chunksize = 10000,
verbose = TRUE
){
# Assert
......@@ -183,7 +183,7 @@ doench2016 <- function(
#' @export
add_efficiency <- function(
spacers, bsgenome, method= c('Doench2014', 'Doench2016')[1],
chunksize = 100000,
chunksize = 10000,
verbose = TRUE, plot = TRUE,
alpha_var = default_alpha_var(spacers)
){
......
......@@ -9,7 +9,7 @@ add_efficiency(
spacers,
bsgenome,
method = c("Doench2014", "Doench2016")[1],
chunksize = 1e+05,
chunksize = 10000,
verbose = TRUE,
plot = TRUE,
alpha_var = default_alpha_var(spacers)
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment