diff --git a/README.md b/README.md index 147389f80f38f48f8c288bca641652c9cf85bfd8..da4a1068ef4b750d4dafb3c2549016afeae4ea77 100644 --- a/README.md +++ b/README.md @@ -1,29 +1,29 @@ -# multicrispr: gRNA design - -[](http://bioconductor.org/checkResults/devel/bioc-LATEST/multicrispr/) -[](https://bioconductor.org/packages/devel/bioc/html/multicrispr.html#archives) -[](https://bioconductor.org/packages/devel/bioc/html/multicrispr.html#since) -[](https://doi.org/10.26508/lsa.202000757) - - -### Installation - - # Install multicrispr - remotes::install_git('https://gitlab.gwdg.de/loosolab/software/multicrispr.git', - repos = BiocManager::repositories()) - # Install azimuth - install.packages('reticulate') - reticulate::conda_create('azienv', c('python=2.7')) - reticulate::use_condaenv('azienv') - reticulate::py_install(c('azimuth', 'scikit-learn==0.17.1'), 'azienv', pip = TRUE) - # Index mm10 and hg38 - BiocManager::install('BSgenome.Mmusculus.UCSC.mm10') - BiocManager::install('BSgenome.Hsapiens.UCSC.hg38') - index_genome(BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10) - index_genome(BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38) - - -### Overview - - - +# multicrispr: gRNA design + +[](http://bioconductor.org/checkResults/devel/bioc-LATEST/multicrispr/) +[](https://bioconductor.org/packages/devel/bioc/html/multicrispr.html#archives) +[](https://bioconductor.org/packages/devel/bioc/html/multicrispr.html#since) +[](https://doi.org/10.26508/lsa.202000757) + + +### Installation + + # Install multicrispr + remotes::install_git('https://gitlab.gwdg.de/loosolab/software/multicrispr.git', + repos = BiocManager::repositories()) + # Install azimuth + install.packages('reticulate') + reticulate::conda_create('azienv', c('python=2.7')) + reticulate::use_condaenv('azienv') + reticulate::py_install(c('azimuth', 'scikit-learn==0.17.1', 'biopython=1.76'), 'azienv', pip = TRUE) + # Index mm10 and hg38 + BiocManager::install('BSgenome.Mmusculus.UCSC.mm10') + BiocManager::install('BSgenome.Hsapiens.UCSC.hg38') + index_genome(BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10) + index_genome(BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38) + + +### Overview + + +