Commit f7babb34 authored by aditya.bhagwat's avatar aditya.bhagwat
Browse files

Fix roxygen issues

parent f48381ca
Pipeline #130117 passed with stages
in 29 seconds
#' Extract subranges
#'
#' Extract subranges from a \code{\link{GRanges-class}} object
#' Extract subranges from a \code{\link[GenomicRanges]{GRanges-class}} object
#'
#' Extract subranges (defined \code{\link{IRanges-class}} format) from a
#' Extract subranges (defined \code{\link[IRanges]{IRanges-class}} format) from a
#' \code{\link{GRanges}} object
#'
#' @param gr \code{\link[GenomicRanges]{GRanges-class}}
......
......@@ -127,6 +127,7 @@ doench2016 <- function(
#' @param bsgenome \code{\link[BSgenome]{BSgenome-class}}
#' @param method 'Doench2014' (default) or 'Doench2016'
#' (requires non-NULL argument python, virtualenv, or condaenv)
#' @param cutoff value to filter on
#' @param chunksize Doench2016 is executed in chunks of chunksize
#' @param verbose TRUE (default) or FALSE
#' @param plot TRUE (default) or FALSE
......
......@@ -40,6 +40,8 @@ filter_efficient(
\item{plot}{TRUE (default) or FALSE}
\item{alpha_var}{NULL or string: var mapped to alpha in plot}
\item{cutoff}{value to filter on}
}
\value{
numeric vector
......
......@@ -17,10 +17,10 @@ extract_subranges(gr, ir, plot = FALSE)
\code{\link[GenomicRanges]{GRanges-class}}.
}
\description{
Extract subranges from a \code{\link{GRanges-class}} object
Extract subranges from a \code{\link[GenomicRanges]{GRanges-class}} object
}
\details{
Extract subranges (defined \code{\link{IRanges-class}} format) from a
Extract subranges (defined \code{\link[IRanges]{IRanges-class}} format) from a
\code{\link{GRanges}} object
}
\examples{
......
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