Commit fa6fa1b9 authored by aditya.bhagwat's avatar aditya.bhagwat
Browse files

readme: use_condaenv., required = TRUE)

parent eda9ac57
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......@@ -14,7 +14,7 @@
# Install azimuth
install.packages('reticulate')
reticulate::conda_create('azienv', c('python=2.7'))
reticulate::use_condaenv('azienv')
reticulate::use_condaenv('azienv', required=TRUE)
reticulate::py_install(c('azimuth', 'scikit-learn==0.17.1', 'biopython==1.76'), 'azienv', pip = TRUE)
# Index mm10 and hg38
BiocManager::install('BSgenome.Mmusculus.UCSC.mm10')
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