Commits · 590f1bad760866b9fb350705654e6e77b2b6106b · loosolab / software / multicrispr · GitLab

07 Apr, 2020 2 commits
- double_flank: improve plot (have flanks and target on same y line) · 590f1bad
  aditya.bhagwat authored Apr 07, 2020
  
  590f1bad
- plot_intervals: add nchrom (default 4) to avoid overcrowding plot · af755ac7
  aditya.bhagwat authored Apr 07, 2020
  
  af755ac7
03 Apr, 2020 7 commits
- BiocCheck · ba714869
  aditya.bhagwat authored Apr 03, 2020
  
  ba714869
- BiocCheck · 672ba7c7
  aditya.bhagwat authored Apr 03, 2020
  
  672ba7c7
- Fix roxygen issues · f7babb34
  aditya.bhagwat authored Apr 03, 2020
  
  f7babb34
- Brunello validation: R -> scripts · f48381ca
  aditya.bhagwat authored Apr 03, 2020
  
  f48381ca
- Update graphs · fe02b95d
  aditya.bhagwat authored Apr 03, 2020
  
  fe02b95d
- Add R/09_read_brunello.R · 3daf59fe
  aditya.bhagwat authored Apr 03, 2020
  
  3daf59fe
- Organize scripts · ff65b53d
  aditya.bhagwat authored Apr 03, 2020
  
  ff65b53d
11 Mar, 2020 5 commits
- Small fix to make earlier commit work · 61c0cd25
  aditya.bhagwat authored Mar 11, 2020
  
  61c0cd25
- doench2016: report execution time · 3ece938a
  aditya.bhagwat authored Mar 11, 2020
  
  3ece938a
- Add assertive.reflection to DESCRIPTION · 17c2a659
  aditya.bhagwat authored Mar 11, 2020
  
  17c2a659
- 08_filter_efficient: keep default chunksize at 100000 · ce79a8fe
  aditya.bhagwat authored Mar 11, 2020
  
  ce79a8fe
- Update EnsDb.Hsapiens.v98 -> 99 · dd0c0275
  aditya.bhagwat authored Mar 11, 2020
  
  dd0c0275
09 Mar, 2020 1 commit
- Fix read_bowtie_results: for mismatch=0 case · f98ca87f
  aditya.bhagwat authored Mar 09, 2020
  
  f98ca87f
06 Mar, 2020 4 commits
- doench2016: set default chunk size to 100K · 9c0e2819
  aditya.bhagwat authored Mar 06, 2020
  
  9c0e2819
- Complete doench2016 parallelization: add mc.cores specification · ad1dba07
  aditya.bhagwat authored Mar 06, 2020
  
  ad1dba07
- Make doench2016() robust for larger datasets (split-apply-combine) · 4c7ee89f
  aditya.bhagwat authored Mar 06, 2020
  
  4c7ee89f
- Satisfy BiocCheck() · 18313f16
  aditya.bhagwat authored Mar 05, 2020
  
  18313f16
05 Mar, 2020 3 commits
- read_bowtie_results: satisfy check() · 1d8deb0c
  aditya.bhagwat authored Mar 05, 2020
  
  1d8deb0c
- doench2016() examples: add explicit import('azimuth') · ab0694b8
  aditya.bhagwat authored Mar 05, 2020
  
  ab0694b8
- Update scripts/07_brunello.R · 37e5a946
  aditya.bhagwat authored Mar 05, 2020
  
  37e5a946
02 Mar, 2020 1 commit
- Improve read_bowtie_results: make aggregation more performant · f85bc1d0
  aditya.bhagwat authored Mar 02, 2020
  
  f85bc1d0
28 Feb, 2020 3 commits
- Merge branch 'master' of gitlab.gwdg.de:loosolab/software/multicrispr · bf119a68
  aditya.bhagwat authored Feb 28, 2020
  
  bf119a68
- Add/update scripts · 28d96410
  aditya.bhagwat authored Feb 28, 2020
  
  28d96410
- Update README.md · 5a00cc20
  aditya.bhagwat authored Feb 28, 2020
  
  5a00cc20
27 Feb, 2020 1 commit
- Fix down_flank: switch order of operations to avoid negative width error · 9dddf39d
  aditya.bhagwat authored Feb 27, 2020
  
  9dddf39d
18 Feb, 2020 1 commit
- Fix documentation · e4ac98c6
  aditya.bhagwat authored Feb 18, 2020
  
  e4ac98c6
14 Feb, 2020 1 commit
- Simplify output interface: OUTDIR and INDEXEDGENOMESDIR · 3bba303d
  aditya.bhagwat authored Feb 14, 2020
  
  3bba303d
13 Feb, 2020 5 commits
- Add scripts/pipeline.R and update scripts/make_figs.R · 57c7999e
  aditya.bhagwat authored Feb 13, 2020
  
  57c7999e
- add_efficiency etc: take use_condaenv etc outside of functions · aadb61df
  aditya.bhagwat authored Feb 13, 2020
  
  aadb61df
- filter_efficient: add documentation on how to install azimuth · c0206943
  aditya.bhagwat authored Feb 13, 2020
  
  c0206943
- filter_prime_specific: add optional argument mismatches · a3b285a7
  aditya.bhagwat authored Feb 13, 2020
  
  a3b285a7
- index_genome: abort if index already exists · 1c21be50
  aditya.bhagwat authored Feb 13, 2020
  
  1c21be50
05 Feb, 2020 3 commits
- Enhance plot_intervals: also plot target ranges and extensions · 699624ae
  aditya.bhagwat authored Feb 05, 2020
  
  699624ae
- Updated graphs · 6126077e
  aditya.bhagwat authored Feb 05, 2020
  
  6126077e
- find_pe_sites: add primer and revtranscript to returned GRanges · 27d2676e
  aditya.bhagwat authored Feb 05, 2020
  
  27d2676e
04 Feb, 2020 3 commits
- Fix add_efficiency: python environments were not correctly passed on · cf9a5992
  aditya.bhagwat authored Feb 04, 2020
  
  cf9a5992
- Additional fixes for R CMD CHECK · adb72aa6
  aditya.bhagwat authored Feb 04, 2020
  
  adb72aa6
- Additional small fix to get clean CHECK results · 07b72551
  aditya.bhagwat authored Feb 04, 2020
  
  07b72551