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scRNAseq.preprocessing
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Updated date
Spike in annotation (closes #4, closes #5)
!1
· created
Apr 11, 2019
by
jens.preussner
Merged
0
updated
Apr 11, 2019
Enabled 10X quantification with STAR-solo
!2
· created
Mar 11, 2020
by
jens.preussner
Merged
0
updated
Mar 11, 2020
add hash-antibody demultiplexing module
!4
· created
May 10, 2021
by
Philipp Goymann
Merged
0
updated
May 10, 2021
add hash notebook
!5
· created
May 10, 2021
by
Philipp Goymann
Merged
0
updated
May 10, 2021
Update plate.md
!3
· created
Apr 19, 2021
by
guilherme.valente
Closed
0
updated
May 11, 2021
Cell hashing
!6
· created
May 11, 2021
by
Philipp Goymann
Closed
0
updated
May 11, 2021
Cell hashing
!7
· created
May 17, 2021
by
Philipp Goymann
Merged
0
updated
May 17, 2021
solve issue by reading jason log of htstream
!8
· created
May 26, 2021
by
Philipp Goymann
Merged
0
updated
May 26, 2021
Dev philipp
!9
· created
Jul 14, 2021
by
Philipp Goymann
Merged
0
updated
Jul 14, 2021
remove bug from vdata snake
!10
· created
Jul 16, 2021
by
Philipp Goymann
Merged
0
updated
Jul 16, 2021
pin adata env
!11
· created
Aug 13, 2021
by
Philipp Goymann
Merged
0
updated
Aug 13, 2021
pin snakemake and add mamba
!12
· created
Aug 13, 2021
by
Philipp Goymann
Merged
0
updated
Aug 13, 2021
fixed: anndata.write() hdf5 file: int() argument must be a string, a bytes-like object or a number
!13
· created
Apr 12, 2022
by
Hendrik Schultheis
Merged
0
updated
Apr 12, 2022
Fix scanpy import error
!14
· created
Apr 14, 2022
by
Hendrik Schultheis
Merged
Approved
0
updated
Apr 14, 2022
Raw hash counts
!15
· created
Jan 11, 2023
by
Hendrik Schultheis
dev
Merged
0
updated
Jan 11, 2023
Dev
!16
· created
Jan 11, 2023
by
Hendrik Schultheis
Merged
0
updated
Jan 11, 2023
Resolve "Extend STAR parameters to adjust UMI filter stringency"
!17
· created
Feb 27, 2023
by
Mette Bentsen
dev
To Do
Merged
Approved
6
updated
Mar 15, 2023
Fix unique sample keys in config.
!18
· created
Mar 07, 2023
by
Hendrik Schultheis
Merged
Approved
1
updated
Mar 28, 2023
Test data config
!19
· created
Mar 30, 2023
by
Hendrik Schultheis
dev
Merged
Approved
2
updated
Mar 31, 2023
FullGene mapping
!20
· created
Jul 27, 2023
by
Hendrik Schultheis
dev
Merged
0
updated
Jul 27, 2023
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