Merge requests · loosolab / software / scRNAseq.preprocessing

Dev

!28 · created Feb 09, 2024 by Hendrik Schultheis
- Merged
updated Feb 09, 2024
Add saving barcode in BAM file as default for starsolo run

!27 · created Dec 20, 2023 by Rene Wiegandt dev
- Merged
- 1
- Approved
updated Feb 09, 2024
Dev

!26 · created Nov 02, 2023 by Hendrik Schultheis
- Merged
updated Nov 02, 2023
Dev

!25 · created Nov 01, 2023 by Hendrik Schultheis
- Merged
updated Nov 01, 2023
Hotfix

!24 · created Nov 01, 2023 by Hendrik Schultheis dev
- Merged
updated Nov 01, 2023
star cell filter

!23 · created Aug 02, 2023 by Hendrik Schultheis
- Merged
updated Aug 02, 2023
Star cellfilter

!22 · created Aug 02, 2023 by Hendrik Schultheis dev
- Merged
- 1
updated Aug 02, 2023
New release

!21 · created Jul 27, 2023 by Hendrik Schultheis
- Merged
updated Jul 27, 2023
FullGene mapping

!20 · created Jul 27, 2023 by Hendrik Schultheis dev
- Merged
updated Jul 27, 2023
Test data config

!19 · created Mar 30, 2023 by Hendrik Schultheis dev
- Merged
- 2
- Approved
updated Mar 31, 2023
Fix unique sample keys in config.

!18 · created Mar 07, 2023 by Hendrik Schultheis
- Merged
- 1
- Approved
updated Mar 28, 2023
Resolve "Extend STAR parameters to adjust UMI filter stringency"

!17 · created Feb 27, 2023 by Mette Bentsen dev
To Do
- Merged
- 6
- Approved
updated Mar 15, 2023
Dev

!16 · created Jan 11, 2023 by Hendrik Schultheis
- Merged
updated Jan 11, 2023
Raw hash counts

!15 · created Jan 11, 2023 by Hendrik Schultheis dev
- Merged
updated Jan 11, 2023
Fix scanpy import error

!14 · created Apr 14, 2022 by Hendrik Schultheis
- Merged
- Approved
updated Apr 14, 2022
fixed: anndata.write() hdf5 file: int() argument must be a string, a bytes-like object or a number

!13 · created Apr 12, 2022 by Hendrik Schultheis
- Merged
updated Apr 12, 2022
pin snakemake and add mamba

!12 · created Aug 13, 2021 by Philipp Goymann
- Merged
updated Aug 13, 2021
pin adata env

!11 · created Aug 13, 2021 by Philipp Goymann
- Merged
updated Aug 13, 2021
remove bug from vdata snake

!10 · created Jul 16, 2021 by Philipp Goymann
- Merged
updated Jul 16, 2021
Dev philipp

!9 · created Jul 14, 2021 by Philipp Goymann
- Merged
updated Jul 14, 2021