Test Overview: Plotting
Here is a list of all plotting functions and if they are tested.
Plotting:
-
search_clustering_parameter -
marker_gene_clustering -
sc_colormap -
flip_embedding -
search_umap_parameters -
search_tsne_parameters -
_search_dim_red_parameters -
plot_group_embeddings -
compare_embeddings -
_get_3d_dotsize -
plot_3D_UMAP -
umap_marker_overview -
umap_pub -
anndata_overview -
plot_pca_variance -
_save_figure -
_make_square -
_add_figure_title -
_add_labels -
_scale_values -
_plot_size_legend -
clustermap_dotplot -
bidirectional_barplot -
plot_obs_violin -
boxplot - yes -
violinplot -
plot_venn -
violin_HVF_distribution -
scatter_HVF_distribution -
rank_genes_plot -
grouped_violin -
group_expression_boxplot -
gene_expression_heatmap -
group_heatmap -
plot_differential_genes -
_n_cells_pieplot -
n_cells_barplot -
group_correlation -
qc_violins -
plot_insertsize -
_link_sliders -
_toggle_linkage -
_update_thresholds -
quality_violin -
get_slider_thresholds -
pseudotime_heatmap