kwargs
A lot of our functions, especially for plotting, contain calls to other plotting functions. For example umap_pub
is basically using scanpy.pl.umap
and adds formatting. So it makes sense to add kwargs
to get the full potential of the underlying function. For some (e.g. umap_pub) we already added this but there are others we haven't.
We should look through our functions and add kwargs
where needed. Functions not related to plotting could benefit from this as well.
Functions without kwargs:
plot_group_embeddings