pip install rust & cmake not found
Installing the sctoolbox raises an error:
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (gseapy, louvain)
This is due to Rust and Cmake not being available during installation. We already fixed this for our docker build. There we added:
pip install 'cmake>=3.18'
mamba install rust
Moving the two lines above from the Dockerfile
to the respective sctoolbox_env.yml
and setup.py
files should fix the issue.