Integrate Kenny's correlation script as a module
Kenny (previously Stainier department, now imaging) has a script which can correlate the expression of different genes across cells and find co-regulated genes. The code exists as individual python functions which are currently reading in .h5ad-files from path. But we could change it to read the current adata object, e.g.:
module.gene_correlation(adata, gene="Klf5")
This is too much work for only the hackathon, but might be started and discussed, and then finished later on.
Code is here: 220216_correlation_search_km.zip