Commit ad21d0fd authored by sludtke42's avatar sludtke42
Browse files

trivial fix for -f option on class averaging

parent 6e63f8c6
......@@ -196,13 +196,13 @@ def main():
cdb.close()
# Make simmx
e2simmxcmd = "e2simmx.py %s/projections_00.hdf %s %s/simmx.hdf -f --saveali --cmp=%s --align=%s --aligncmp=%s --verbose=%d" % (options.path,options.untiltdata,options.path,options.simcmp,options.simalign,options.simaligncmp,options.verbose)
e2simmxcmd = "e2simmx.py %s/projections_00.hdf %s %s/simmx.hdf --saveali --cmp=%s --align=%s --aligncmp=%s --verbose=%d" % (options.path,options.untiltdata,options.path,options.simcmp,options.simalign,options.simaligncmp,options.verbose)
if options.simralign: e2simmxcmd += " --ralign=%s --raligncmp=%s" %(options.simralign,options.simraligncmp)
if options.parallel: e2simmxcmd += " --parallel=%s" %options.parallel
if options.shrink: e2simmxcmd += " --shrink=%d" %options.shrink
run(e2simmxcmd)
e2simmxcmd = "e2simmx.py %s/projections_00.hdf %s %s/simmx_tilt.hdf -f --saveali --cmp=%s --align=%s --aligncmp=%s --verbose=%d" % (options.path,options.tiltdata,options.path,options.simcmp,options.simalign,options.simaligncmp,options.verbose)
e2simmxcmd = "e2simmx.py %s/projections_00.hdf %s %s/simmx_tilt.hdf --saveali --cmp=%s --align=%s --aligncmp=%s --verbose=%d" % (options.path,options.tiltdata,options.path,options.simcmp,options.simalign,options.simaligncmp,options.verbose)
if options.simralign: e2simmxcmd += " --ralign=%s --raligncmp=%s" %(options.simralign,options.simraligncmp)
if options.parallel: e2simmxcmd += " --parallel=%s" %options.parallel
if options.shrink: e2simmxcmd += " --shrink=%d" %options.shrink
......
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