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Commit b2bd1f4a authored by shadow_walker's avatar shadow_walker
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remove c++ unused/broken tests: basic.cpp, imageio.cpp

parent 1bb83f9a
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rt/imageio/CMakeLists.txt
View file @ b2bd1f4a
#ADD_EXECUTABLE(basic basic.cpp)
#TARGET_LINK_LIBRARIES(basic EM2)
set(CTEST_BINARY_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
add_executable(test_eer test_eer.cpp)
......
rt/imageio/basic.cpp deleted 100644 → 0
View file @ 1bb83f9a
/*
* Author: Steven Ludtke, 04/10/2003 (sludtke@bcm.edu)
* Copyright (c) 2000-2006 Baylor College of Medicine
*
* This software is issued under a joint BSD/GNU license. You may use the
* source code in this file under either license. However, note that the
* complete EMAN2 and SPARX software packages have some GPL dependencies,
* so you are responsible for compliance with the licenses of these packages
* if you opt to use BSD licensing. The warranty disclaimer below holds
* in either instance.
*
* This complete copyright notice must be included in any revised version of the
* source code. Additional authorship citations may be added, but existing
* author citations must be preserved.
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
* */
#include "emobject.h"
#include "emcache.h"
#include "emutil.h"
#include "emdata.h"
#include "xydata.h"
#include "emassert.h"
#include "processor.h"
using namespace EMAN;
int test_emobject()
{
EMObject e1 = EMObject();
int n = e1;
EMObject e2 = EMObject(12.43);
n = e2;
float f = e2;
f = 2;
const char *s1 = e2;
Assert(strcmp(s1, "") == 0);
EMData * image1 = new EMData();
EMObject e3(image1);
EMData * image2 = e3;
Assert(image1 == image2);
XYData * xy1 = new XYData();
EMObject e4(xy1);
XYData * xy2 = e4;
Assert(xy1 == xy2);
if( image1 )
{
delete image1;
image1 = 0;
}
return 0;
}
int test_Dict()
{
Dict d;
d["a"] = 1;
d["b"] = 2;
d["c"] = 3;
bool f1 = d.has_key("hello");
bool f2 = d.has_key("c");
Assert(f1 == false);
Assert(f2 == true);
Assert((int)d["a"] == (int)d.get("a"));
EMUtil::dump_dict(d);
return 0;
}
int test_emcache()
{
EMCache<float>* em = new EMCache<float>(4);
for (int i = 0; i < 20; i++) {
char name[32];
sprintf(name, "name%d", i);
float* f = new float(i);
em->add(string(name), f);
float* f1 = em->get(name);
Assert(f == f1);
}
return 0;
}
void test_factory()
{
//Factory<Processor>::instance()->dump();
EMAN::dump_processors();
}
int main()
{
int err = 0;
err = test_emobject();
err = test_emcache();
err = test_Dict();
test_factory();
return err;
}
rt/imageio/imageio.cpp deleted 100644 → 0
View file @ 1bb83f9a
/*
* Author: Steven Ludtke, 04/10/2003 (sludtke@bcm.edu)
* Copyright (c) 2000-2006 Baylor College of Medicine
*
* This software is issued under a joint BSD/GNU license. You may use the
* source code in this file under either license. However, note that the
* complete EMAN2 and SPARX software packages have some GPL dependencies,
* so you are responsible for compliance with the licenses of these packages
* if you opt to use BSD licensing. The warranty disclaimer below holds
* in either instance.
*
* This complete copyright notice must be included in any revised version of the
* source code. Additional authorship citations may be added, but existing
* author citations must be preserved.
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
* */
#include <cstdio>
#include <cstdlib>
#include "emdata.h"
#include "util.h"
#include "transform.h"
#include "emutil.h"
#include "log.h"
using namespace EMAN;
static int total_ntests = 0;
static int fail_ntests = 0;
static int err_code = 0;
int write_image(EMData* em, const char* infile, char* outfile,
int r_image_index, EMUtil::ImageType image_type,
int w_image_index = 0)
{
const char* imgext = EMUtil::get_imagetype_name(image_type);
bool is_new_file = false;
int err = 0;
if (outfile == 0) {
is_new_file = true;
outfile = new char[256];
strcpy(outfile, infile);
const char* ext = strrchr(infile, '.');
outfile[strlen(infile) - strlen(ext)] = '\0';
sprintf(outfile, "%s_%d.%s", outfile, r_image_index, imgext);
}
//em->dump_data(outfile);
try {
em->write_image(outfile, w_image_index, image_type);
}
catch(...) {
err = 1;
}
if (is_new_file) {
if( outfile )
{
delete [] outfile;
outfile = 0;
}
}
return err;
}
int test_image(const char* base_filename, int r_image_index = 0,
Region* area=0, bool is_3d = false,
int expected_err = 0, char* outfile = 0,
EMUtil::ImageType image_type = EMUtil::IMAGE_UNKNOWN,
int w_image_index = 0)
{
char home[128];
sprintf(home, getenv("HOME"));
char filename[256];
sprintf(filename, "%s/images/%s", home, base_filename);
int err = 0;
try {
EMData* em = new EMData();
em->read_image(filename, r_image_index, false, area, is_3d);
if (image_type == EMUtil::IMAGE_UNKNOWN) {
image_type = EMUtil::IMAGE_MRC;
}
write_image(em, base_filename, outfile, r_image_index, image_type, w_image_index);
if( em )
{
delete em;
em = 0;
}
}
catch(...) {
err = 1;
LOGERR("image read/write error: %s\n", base_filename);
}
total_ntests++;
if (err != expected_err) {
fail_ntests++;
err_code = 1;
}
return err;
}
int fail_test(const char* base_filename, int r_image_index = 0,
Region* area=0, bool is_3d = false, char* outfile = 0,
EMUtil::ImageType image_type = EMUtil::IMAGE_UNKNOWN,
int w_image_index = 0)
{
return test_image(base_filename, r_image_index, area, is_3d, 1,
outfile, image_type, w_image_index);
}
int pass_test(const char* base_filename, int r_image_index = 0,
Region* area=0, bool is_3d = false, char* outfile = 0,
EMUtil::ImageType image_type = EMUtil::IMAGE_UNKNOWN,
int w_image_index = 0)
{
return test_image(base_filename, r_image_index, area, is_3d, 0,
outfile, image_type, w_image_index);
}
int test_mrc()
{
const char* file3d = "3d.mrc";
Region good_3d1(0, 0, 0, 100, 100, 10);
pass_test(file3d, 0, &good_3d1, false, "3d-all-1.mrc");
Region good_3d2(0, 0, 24, 100, 100, 10);
pass_test(file3d, 0, &good_3d2, false, "3d-all-2.mrc");
char filename1[32];
const int ids[] = {0, 20, 99};
int n_ids = sizeof(ids) / sizeof(int);
for (int i = 0; i < n_ids; i++) {
Region d3_d2(0, 0, ids[i], 100, 100, 1);
sprintf(filename1, "3d_each_%d.mrc", ids[i]);
pass_test(file3d, 0, &d3_d2, false, filename1);
}
const char* file1d = "tablet.mrc";
Region good_2d1(0, 1500, 300, 400);
pass_test(file1d, 0, 0, false, "tablet_all1.mrc");
pass_test(file1d, 0, &good_2d1, false, "tablet_good1.mrc");
pass_test(file1d, 0, 0, false, "tablet_all1.mrc");
pass_test(file3d, 0, 0, false, "3d-all-1.mrc");
pass_test(file1d, 0, &good_2d1, false, "tablet_good1.mrc");
Region good_3d3(0, 0, 0, 20, 20, 20);
pass_test(file3d, 0, &good_3d3, false, "3d_good1.mrc");
pass_test(file3d, 0, 0, false, "3d-all-1.mrc");
Region bad_2d1(-2, -4, 10, 20);
Region bad_2d2(1, 2, 3000, 400);
Region bad_3d1(0, 1, 2, 400, 230, 5);
Region bad_3d2(0, -3, -5, 3, 5, 9);
fail_test(file1d, -3, 0, false, "tablet_no.mrc");
fail_test(file1d, 0, &bad_2d1, false, "tablet_bad1.mrc");
fail_test(file1d, 0, &bad_2d2, false, "tablet_bad2.mrc");
fail_test(file3d, 40, 0, false, "3d-1.mrc");
fail_test(file3d, 10, 0, false, "3d-all-2.mrc");
fail_test(file3d, 120, 0, false, "3d_bad0.mrc");
fail_test(file3d, 0, &bad_3d1, false, "3d_bad1.mrc");
fail_test(file3d, 0, &bad_3d2, false, "3d_bad2.mrc");
return 0;
}
int test_spider()
{
pass_test("spider-single.spi");
pass_test("spider-stack.spi", 0, 0, true);
pass_test("spider-stack.spi", 27, 0, false, "spider-3d_27.mrc");
Region r1(10, 10, 400, 800);
pass_test("spider-single.spi", 0, &r1, false, "spider-single_r1.mrc");
Region r2(0, 0, 40, 100);
pass_test("spider-stack.spi", 27, &r2, false, "spider-3d_r2.mrc");
pass_test("search.dm3", 0, 0, false, 0, EMUtil::IMAGE_SPIDER);
pass_test("search.dm3", 0, 0, false, 0, EMUtil::IMAGE_SINGLE_SPIDER);
pass_test("tablet.mrc", 0, 0, false, 0, EMUtil::IMAGE_SPIDER);
pass_test("tablet.mrc", 0, 0, false, 0, EMUtil::IMAGE_SINGLE_SPIDER);
for (int i = 0; i < 20; i++) {
Region d32(0, 0, i, 100, 100, 1);
pass_test("3d.mrc", 0, &d32, false, "3d_all.spi", EMUtil::IMAGE_SPIDER, i);
}
return err_code;
}
int test_dm3()
{
Region good1(0, 0, 400, 400);
Region good2(120, 230, 500, 600);
Region bad1(0, 0, 1400, 400);
pass_test("ccd.dm3");
pass_test("search.dm3");
pass_test("search.dm3", 0, &good1, false, "search_good1.mrc");
pass_test("search.dm3", 0, &good2, false, "search_good2.mrc");
fail_test("search.dm3", 0, &bad1, false, "search_bad1.mrc");
pass_test("ccd.dm3", 0, &good1, false, "ccd_good1.mrc");
pass_test("ccd.dm3", 0, &good2, false, "ccd_good2.mrc");
return err_code;
}
int test_icos()
{
pass_test("icos3f.map", 12);
pass_test("icos2f.map", 12);
pass_test("icos2f.map", 220);
pass_test("icos2f.map", 2, 0, true);
fail_test("icos3f.map", 111);
pass_test("icos3f.map", 0, 0, true);
pass_test("tablet.mrc", 0, 0, false, 0, EMUtil::IMAGE_ICOS);
return err_code;
}
int test_tiff()
{
pass_test("ducky-16bits.tif");
pass_test("ducky-8bits.tif");
pass_test("test2.tif");
Region good1(1, 2, 12, 23);
Region good2(1, 2, 220, 212);
Region good3(1001, 1, 412, 8974);
pass_test("ducky-16bits.tif", 0, &good1, false, "ducky16-good1.mrc");
pass_test("ducky-8bits.tif", 0, &good2, false, "ducky8-good1.mrc");
pass_test("test2.tif", 0, &good3, false, "test2_good3.mrc");
Region bad1(1234, 0, 200, 300);
Region bad2(123, 234, 1220, 212);
fail_test("test2.tif", 1);
fail_test("ducky-16bits.tif", 0, &bad1, false, "ducky16-bad1.mrc");
fail_test("ducky-8bits.tif", 0, &bad2, false, "ducky8-bad2.mrc");
return err_code;
}
int test_hdf()
{
Region r1(0, 0, 800, 800);
pass_test("search.h5", 0, &r1, false, "search_r1.mrc");
Region r2(0, 0, 20, 100, 100, 1);
pass_test("3d.h5", 0, &r2, false, "3d_r1.mrc");
pass_test("t1.h5");
pass_test("m1.h5");
Region good1(0, 0, 0, 255, 255, 1);
Region good2(0, 0, 0, 255, 255, 10);
Region good3(0, 0, 40, 255, 255, 20);
Region good4(10, 10, 0, 111, 121, 50);
pass_test("m1.h5", 0, &good1, false, "m1_good1.mrc");
pass_test("m1.h5", 0, &good2, false, "m1_good2.mrc");
pass_test("m1.h5", 0, &good3, false, "m1_good3.mrc");
pass_test("m1.h5", 0, &good4, false, "m1_good4.mrc");
pass_test("bob_ctf.mrc", 0, 0, false, 0, EMUtil::IMAGE_HDF);
pass_test("tablet.mrc", 0, 0, false, 0, EMUtil::IMAGE_HDF);
pass_test("search.dm3", 0, 0, false, 0, EMUtil::IMAGE_HDF);
pass_test("3d.mrc", 0, 0, false, 0, EMUtil::IMAGE_HDF);
return err_code;
}
int test_pgm()
{
pass_test("clinton.pgm", 0, 0, false, 0, EMUtil::IMAGE_IMAGIC);
pass_test("bob.pgm");
Region r1(20, 20, 200, 200);
pass_test("clinton.pgm", 0, &r1, false, "clinton_1.mrc");
pass_test("bob.pgm", 0, &r1, false, "bob_1.mrc");
return err_code;
}
int test_lst()
{
for (int k = 0; k < 5; k++) {
pass_test("lst1.lst", k);
}
pass_test("cls0000.lst", 0);
pass_test("cls0000.lst", 1);
pass_test("cls0000.lst", 19);
pass_test("cls0000.lst", 48);
fail_test("cls0000.lst", -1);
fail_test("cls0000.lst", 49);
fail_test("cls0000.lst", 100);
Region r1(20, 15, 55, 56);
pass_test("cls0000.lst", 4);
pass_test("cls0000.lst", 0, &r1, false, "cls_r1.mrc");
return err_code;
}
int test_png()
{
pass_test("window.png");
pass_test("poker.png");
pass_test("tablet.mrc", 0, 0, false, 0, EMUtil::IMAGE_PNG);
pass_test("search.dm3", 0, 0, false, 0, EMUtil::IMAGE_PNG);
return err_code;
}
int test_sal()
{
pass_test("pds_tablet.hdr");
Region r1(1, 1, 11850, 1200);
Region r2(100, 200, 1500, 800);
Region r3(100, 200, 11000, 200);
pass_test("pds_tablet.hdr", 0, &r1, false, "pds_tablet_r1.mrc");
pass_test("pds_tablet.hdr", 0, &r2, false, "pds_tablet_r2.mrc");
pass_test("pds_tablet.hdr", 0, &r3, false, "pds_tablet_r3.mrc");
return err_code;
}
int test_imagic()
{
#if 0
pass_test("micam.hed", 12, 0, true);
pass_test("ali.hed", 111);
pass_test("classes.to.hed", 271);
Region r1(3, 5, 50, 75);
Region r2(12, 13, 31, 100, 100, 100);
pass_test("classes.to.hed", 271, &r1, false, "classes_r1.mrc");
pass_test("micam.hed", 0, &r2, true, "micam_r2.mrc");
pass_test("start.hed", 100);
pass_test("start.hed", 0, 0, true);
pass_test("start.hed", 100);
fail_test("start.hed", 500);
fail_test("start.hed", 600);
pass_test("tablet.mrc", 0, 0, false, 0, EMUtil::IMAGE_IMAGIC);
pass_test("start.hed", 0, 0, true);
pass_test("start.hed", 0, 0, true, 0, EMUtil::IMAGE_IMAGIC);
pass_test("3d.mrc", 0, 0, false, 0, EMUtil::IMAGE_IMAGIC);
#endif
EMData* e = new EMData();
e->read_image("/home/lpeng/images/tablet.mrc");
for (int i = 0; i < 2; i++) {
e->write_image("tablet1.img", -1, EMUtil::IMAGE_IMAGIC);
}
if( e )
{
delete e;
e = 0;
}
return err_code;
}
int test_pif()
{
pass_test("sv-2d.pif");
pass_test("sv-2d.pif", 19);
fail_test("sv-2d.pif", -1);
fail_test("sv-2d.pif", 158);
pass_test("sv-3d.pif", 0);
fail_test("sv-3d.pif", 1);
fail_test("sv-3d.pif", -1);
return err_code;
}
int test_performance()
{
const char* imagefile = "/home/lpeng/raw_images/stress/start.lst";
int nimg = EMUtil::get_image_count(imagefile);
EMData* d = new EMData();
double x_sum = 0;
for (int i = 0; i < nimg; i++) {
d->read_image(imagefile, i, true);
Dict dict = d->get_attr_dict();
int nx = dict.get("nx");
x_sum += nx;
}
printf("nimg = %d, nx sum = %f\n", nimg, x_sum);
if( d )
{
delete d;
d = 0;
}
return 0;
}
void usage()
{
printf("usage: imageio -vN dm3|tiff|hdf|pif|mrc|spider|pgm|lst|icos|png|sal|amira|gatan2|imagic\n");
}
int main(int argc, char* argv[])
{
if (argc == 1) {
usage();
exit(1);
}
Util::set_log_level(argc, argv);
const char* imageformat = argv[argc-1];
printf("Testing '%s' imageio\n\n", imageformat);
if (strcmp(imageformat, "dm3") == 0) {
test_dm3();
}
else if (strcmp(imageformat, "tiff") == 0) {
test_tiff();
}
else if (strcmp(imageformat, "hdf") == 0) {
test_hdf();
}
else if (strcmp(imageformat, "pif") == 0) {