From 6626531d6784643e2169649b24c90ad09c47b8c6 Mon Sep 17 00:00:00 2001
From: Kristian Ullrich <ullrich@evolbio.mpg.de>
Date: Wed, 13 Nov 2024 22:11:55 +0100
Subject: [PATCH] # try to fix
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 5a17141..1e4c0ab 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -2,7 +2,7 @@ image: rocker/r-ver:4.4.2
before_script:
- apt-get update
- - apt-get -y install pandoc libcurl4-openssl-dev r-cran-rcpp r-cran-devtools r-cran-testthat r-cran-curl r-cran-seqinr r-cran-ape r-bioc-biostrings r-cran-uuid r-cran-callr r-cran-rmarkdown r-bioc-biocstyle
+ - apt-get -y install libfontconfig1-dev libssl-dev libxml2-dev pandoc libcurl4-openssl-dev r-cran-rcpp r-cran-devtools r-cran-testthat r-cran-curl r-cran-seqinr r-cran-ape r-bioc-biostrings r-cran-uuid r-cran-callr r-cran-rmarkdown r-bioc-biocstyle
- R -e "install.packages('BiocManager'); BiocManager::install(version = '3.20')"
- R -e "dir(); getwd(); sessionInfo(); install.packages('tidyverse', repos='http://cran.rstudio.com'); install.packages('pkgdown', repos='http://cran.rstudio.com'); install.packages('RcppThread', repos='http://cran.rstudio.com'); Rcpp::compileAttributes(); devtools::install(); update.packages(ask = FALSE, checkBuilt = TRUE)"
--
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