From e323a1dff74b84d32d2001cb474fe31f0de396e8 Mon Sep 17 00:00:00 2001
From: Michelle Weidling <weidling@sub.uni-goettingen.de>
Date: Mon, 13 Mar 2023 12:37:28 +0100
Subject: [PATCH] fix: cleaning up
---
workflows/execute_workflows.sh | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/workflows/execute_workflows.sh b/workflows/execute_workflows.sh
index 185e1eb..0429460 100755
--- a/workflows/execute_workflows.sh
+++ b/workflows/execute_workflows.sh
@@ -13,6 +13,10 @@ if [[ -d workflows/nf-results ]]; then
rm -rf workflows/nf-results
fi
+if [[ -d workflows/results ]]; then
+ rm -rf workflows/results
+fi
+
set -euo pipefail
adjust_workflow_settings() {
@@ -158,8 +162,9 @@ echo "Summarize JSONs to one file …"
quiver summarize-benchmarks
echo "Done."
-# clean up
+echo "Cleaning up …"
rm -rf "$WORKSPACE_DIR"
rm -rf "$ROOT"/work
rm -rf "$WORKFLOW_DIR"/nf-results
-rm "$WORKFLOW_DIR"/results/*.json
+rm -rf "$WORKFLOW_DIR"/results
+rm "$WORKFLOW_DIR"/ocrd_workflows/*.nf
--
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