Merge branch 'develop' into 'main'
Added variant annotated section filter, added unit test See merge request UKEB/mtb/onkopus-modules/adagenes!204
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- adagenes/__init__.py 2 additions, 1 deletionadagenes/__init__.py
- adagenes/clients/__init__.py 1 addition, 0 deletionsadagenes/clients/__init__.py
- adagenes/clients/filter/__init__.py 3 additions, 0 deletionsadagenes/clients/filter/__init__.py
- adagenes/clients/filter/defined_variant_filter.py 23 additions, 0 deletionsadagenes/clients/filter/defined_variant_filter.py
- adagenes/clients/filter/random_variant_filter.py 51 additions, 0 deletionsadagenes/clients/filter/random_variant_filter.py
- adagenes/clients/filter/section_filter.py 26 additions, 0 deletionsadagenes/clients/filter/section_filter.py
- adagenes/clients/sort/__init__.py 1 addition, 0 deletionsadagenes/clients/sort/__init__.py
- adagenes/clients/sort/positional_sort.py 52 additions, 0 deletionsadagenes/clients/sort/positional_sort.py
- adagenes/plot/generate_data/__init__.py 3 additions, 1 deletionadagenes/plot/generate_data/__init__.py
- adagenes/plot/generate_data/generate_aa_features_heatmap_data.py 34 additions, 0 deletions...s/plot/generate_data/generate_aa_features_heatmap_data.py
- adagenes/plot/generate_data/generate_protein_pathogenicity_heatmap_data.py 197 additions, 5 deletions...erate_data/generate_protein_pathogenicity_heatmap_data.py
- adagenes/plot/generate_data/generate_upset_plot_data.py 163 additions, 0 deletionsadagenes/plot/generate_data/generate_upset_plot_data.py
- adagenes/plot/generate_plots/__init__.py 2 additions, 0 deletionsadagenes/plot/generate_plots/__init__.py
- adagenes/plot/generate_plots/drug_classification_intersections.py 83 additions, 0 deletions.../plot/generate_plots/drug_classification_intersections.py
- adagenes/plot/generate_plots/generate_aa_features_heatmap_plots.py 248 additions, 0 deletions...plot/generate_plots/generate_aa_features_heatmap_plots.py
- adagenes/plot/generate_plots/generate_upset_plots.py 145 additions, 0 deletionsadagenes/plot/generate_plots/generate_upset_plots.py
- adagenes/processing/json_biomarker.py 3 additions, 0 deletionsadagenes/processing/json_biomarker.py
- adagenes/tools/__init__.py 2 additions, 0 deletionsadagenes/tools/__init__.py
- adagenes/tools/parse_annotations.py 31 additions, 0 deletionsadagenes/tools/parse_annotations.py
- requirements.txt 1 addition, 0 deletionsrequirements.txt
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