Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
Changes in blood cell deformability in Chorea-Acanthocytosis and effects of treatment with dasatinib or lithium
Manage
Activity
Members
Plan
Wiki
Code
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Deploy
Releases
Package Registry
Model registry
Operate
Terraform modules
Analyze
Contributor analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Felix Reichel
Changes in blood cell deformability in Chorea-Acanthocytosis and effects of treatment with dasatinib or lithium
Commits
7d7da405
Commit
7d7da405
authored
3 years ago
by
Felix Reichel
Browse files
Options
Downloads
Patches
Plain Diff
Add environment.yml and update README
parent
4fd8e640
No related branches found
No related tags found
No related merge requests found
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
README.md
+14
-2
14 additions, 2 deletions
README.md
environment.yml
+125
-0
125 additions, 0 deletions
environment.yml
with
139 additions
and
2 deletions
README.md
+
14
−
2
View file @
7d7da405
...
...
@@ -8,10 +8,22 @@ The folder `figure_plots` contains Jupyter notebooks that were used to create th
To run the notebooks an installation of python>=3.7 is needed.
The
`requirements.txt`
contains all dependencies for the notebooks to work. Please create an virtual environment, e.g.
with Anaconda's
`conda create`
command and run the following line:
The
`requirements.txt`
and
`environment.yml`
contain all dependencies for the notebooks to work and can be installed
either with pip or conda. Please create an virtual environment, e.g.
with Anaconda's
`conda create`
command and run the following commands:
Create a conda virtual environment from the environment.yml by running:
```
conda env create -f environment.yml
```
The default environment name will be
`py37_chac`
Or from the requirements.txt:
```
# using Conda
conda create --name <env_name> --file requirements.txt
# using pip
pip install -r requirements.txt
```
...
...
This diff is collapsed.
Click to expand it.
environment.yml
0 → 100644
+
125
−
0
View file @
7d7da405
name
:
py37_chac
channels
:
-
anaconda
-
defaults
dependencies
:
-
blas=1.0=mkl
-
bottleneck=1.3.2=py37h2a96729_1
-
brotlipy=0.7.0=py37he774522_1000
-
ca-certificates=2021.10.26=haa95532_4
-
certifi=2020.6.20=py37_0
-
cffi=1.14.3=py37h7a1dbc1_0
-
cryptography=3.1.1=py37h7a1dbc1_0
-
idna=2.10=py_0
-
intel-openmp=2021.4.0=haa95532_3556
-
mkl=2021.4.0=haa95532_640
-
mkl-service=2.4.0=py37h2bbff1b_0
-
mkl_fft=1.3.1=py37h277e83a_0
-
mkl_random=1.2.2=py37hf11a4ad_0
-
numpy-base=1.21.5=py37hc2deb75_0
-
openssl=1.1.1m=h2bbff1b_0
-
pip=21.2.4=py37haa95532_0
-
pycparser=2.20=py_2
-
pyopenssl=19.1.0=py_1
-
pysocks=1.7.1=py37_1
-
python=3.7.3=h8c8aaf0_1
-
six=1.15.0=py_0
-
sqlite=3.37.2=h2bbff1b_0
-
urllib3=1.25.11=py_0
-
vc=14.2=h21ff451_1
-
vs2015_runtime=14.27.29016=h5e58377_2
-
wheel=0.37.1=pyhd3eb1b0_0
-
win_inet_pton=1.1.0=py37_0
-
wincertstore=0.2=py37haa95532_2
-
pip
:
-
attrs==21.4.0
-
backcall==0.2.0
-
bleach==4.1.0
-
colorama==0.4.4
-
cycler==0.10.0
-
dclab==0.20.3
-
decorator==5.1.1
-
defusedxml==0.7.1
-
entrypoints==0.4
-
h5py==2.10.0
-
helpdev==0.7.1
-
imageio==2.8.0
-
imageio-ffmpeg==0.4.3
-
imagesize==1.2.0
-
importlib-metadata==4.11.1
-
importlib-resources==5.4.0
-
intervaltree==3.0.2
-
ipykernel==5.1.3
-
ipython==7.11.1
-
ipython-genutils==0.2.0
-
ipywidgets==7.5.1
-
jedi==0.18.1
-
jinja2==3.0.3
-
joblib==1.1.0
-
json5==0.9.6
-
jsonschema==4.4.0
-
jupyter==1.0.0
-
jupyter-client==5.3.4
-
jupyter-console==6.0.0
-
jupyter-core==4.6.1
-
jupyterlab==1.2.4
-
jupyterlab-server==1.0.6
-
kiwisolver==1.3.2
-
markupsafe==2.0.1
-
matplotlib==3.4.1
-
mistune==0.8.4
-
nbconvert==5.6.1
-
nbformat==5.1.3
-
networkx==2.6.3
-
notebook==6.0.2
-
nptdms==0.17.1
-
numpy==1.17.4
-
opencv-python==4.5.1.48
-
packaging==20.0
-
pandas==1.2.4
-
pandocfilters==1.5.0
-
parso==0.8.3
-
patsy==0.5.2
-
pickleshare==0.7.5
-
pillow==9.0.1
-
prometheus-client==0.13.1
-
prompt-toolkit==2.0.10
-
pygments==2.11.2
-
pyparsing==3.0.7
-
pyper==1.1.2
-
pyqt5-qt5==5.15.2
-
pyqt5-sip==12.7.0
-
pyqtgraph==0.12.1
-
pyrsistent==0.18.1
-
pyside2==5.15.2
-
python-dateutil==2.8.2
-
pytz==2021.3
-
pywavelets==1.2.0
-
pywin32==303
-
pywinpty==2.0.2
-
pyzmq==22.3.0
-
qdarkstyle==2.8
-
qtawesome==0.6.0
-
qtconsole==4.6.0
-
qtpy==1.9.0
-
scikit-image==0.15.0
-
scikit-learn==0.22.1
-
scipy==1.3.2
-
seaborn==0.11.2
-
send2trash==1.8.0
-
setuptools==60.9.2
-
shiboken2==5.15.2
-
sortedcontainers==2.4.0
-
statsmodels==0.10.1
-
terminado==0.13.1
-
testpath==0.5.0
-
tornado==6.1
-
tqdm==4.40.2
-
traitlets==5.1.1
-
typing-extensions==4.1.1
-
wcwidth==0.2.5
-
webencodings==0.5.1
-
widgetsnbextension==3.5.2
-
xlrd==1.2.0
-
zipp==3.7.0
prefix
:
C:\Users\freiche\Anaconda3\envs\py37_chac
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment