Merge requests · loosolab

Feature_annotation_jan into annotation branch

loosolab/software/sc_framework!52 · created Aug 09, 2022 by Jan Detleffsen feature_annotation
- Merged
- 14
- Approved
updated Sep 08, 2022
Draft: Adding LISI batch effect evaluation

loosolab/software/sc_framework!51 · created Aug 08, 2022 by Rene Wiegandt batch_correction
- Closed
- 1
updated Aug 10, 2022
Added automatic gene labeling & reformatting of notebooks

loosolab/software/sc_framework!50 · created Aug 05, 2022 by Mette Bentsen dev
- Merged
- 21
- Approved
updated Aug 05, 2022
Added missing dependency

loosolab/container/r-splicing!6 · created Aug 02, 2022 by Rene Wiegandt
- Merged
updated Aug 02, 2022
Convert adata

loosolab/software/sc_framework!49 · created Jul 28, 2022 by Hendrik Schultheis dev
- Merged
- Approved
updated Jul 28, 2022
Functionality for creation of TOBIAS config from input bams

loosolab/software/sc_framework!48 · created Jul 25, 2022 by Mette Bentsen dev
- Merged
- 8
- Approved
updated Jul 25, 2022
Resolve "Linting W503 vs. W504"

loosolab/software/sc_framework!47 · created Jul 25, 2022 by Hendrik Schultheis dev
- Merged
- 1
- Approved
updated Jul 25, 2022
Added draft for batch correction and wrapper functions

loosolab/software/sc_framework!46 · created Jul 25, 2022 by Mette Bentsen dev
- Merged
- 40
- Approved
updated Oct 31, 2022
Defining best pc

loosolab/software/sc_framework!45 · created Jul 22, 2022 by guilherme.valente dev
- Merged
- 11
- Approved
updated Aug 05, 2022
Function to check minimun requirements of anndata object

loosolab/software/sc_framework!44 · created Jul 21, 2022 by guilherme.valente dev
- Merged
- 27
- Approved
updated Aug 03, 2022
Note 3: Functions to run_PCA

loosolab/software/sc_framework!43 · created Jul 21, 2022 by guilherme.valente dev
- Merged
- 56
- Approved
updated Aug 05, 2022
Update setup.py

loosolab/software/loosolab-kube!7 · created Jul 21, 2022 by Philipp Goymann
- Merged
updated Jul 21, 2022
Analysis environment

loosolab/software/sc_framework!42 · created Jul 21, 2022 by Hendrik Schultheis dev
- Merged
- 11
- Approved
updated Jul 22, 2022
Fatemeh test

loosolab/software/sc_framework!41 · created Jul 20, 2022 by Fatemeh Khassafi dev
- Merged
- Approved
updated Jul 20, 2022
Batch correction overview plot

loosolab/software/sc_framework!40 · created Jul 19, 2022 by Hendrik Schultheis batch_correction
- Merged
- 9
- Approved
updated Aug 08, 2022
Draft: Started solving flake8 linting errors

loosolab/software/sc_framework!39 · created Jul 18, 2022 by Mette Bentsen import-cleaning
- Merged
- 6
updated Jul 18, 2022
Improve code quality

loosolab/software/sc_framework!38 · created Jul 18, 2022 by Hendrik Schultheis dev
- Merged
- 11
- Approved
updated Jul 22, 2022
Addition of 3D UMAP plot

loosolab/software/sc_framework!37 · created Jul 18, 2022 by Mette Bentsen dev
- Merged
updated Oct 31, 2022
implemented parallel option for splitting bam files

loosolab/software/sc_framework!36 · created Jul 18, 2022 by Hendrik Schultheis bam_splitting
- Merged
- Approved
updated Jul 18, 2022
Documentation page containing notebooks and API for sctoolbox

loosolab/software/sc_framework!35 · created Jul 15, 2022 by Mette Bentsen dev
- Merged
- 2
- Approved
updated Jul 21, 2022