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Daria Jensen requested to merge main into master
  • /Daria/functions/reshape_sub_logfiles.m
  • /Daria/functions/selectfields.m
  • /Daria/functions/tsv_read.m
  • /Daria/2_1st_level_task_fMRI/wanting/A_first_level_script_loop.m
  • /Daria/2_1st_level_task_fMRI/wanting/B_first_level_script_loop.m
  • /Daria/2_1st_level_task_fMRI/wanting/a_run_sanity_check.m
  • /Daria/2_1st_level_task_fMRI/wanting/a_sanity_check.asv
  • /Daria/2_1st_level_task_fMRI/wanting/a_sanity_check.m
  • /Daria/2_1st_level_task_fMRI/wanting/summary_liking_missed_items.csv
  • /Daria/2_1st_level_task_fMRI/wanting/summary_wanting_missed_items.csv
  • /Daria/3_2nd_level_fmri_swe/misc/start_swe.m
  • /Daria/3_2nd_level_fmri_swe/misc/swe_2nd_level.m
  • /Daria/3_2nd_level_fmri_swe/misc/swe_2nd_level_job.m
  • /Daria/3_2nd_level_fmri_swe/.Rhistory
  • /Daria/3_2nd_level_fmri_swe/.visualize_results.sh.kate-swp
  • /Daria/3_2nd_level_fmri_swe/.~lock.Design_Matrix.csv#
  • /Daria/3_2nd_level_fmri_swe/Design_Matrix.csv
  • /Daria/3_2nd_level_fmri_swe/Design_Matrix_with_all_confounders.csv
  • /Daria/3_2nd_level_fmri_swe/README.md
  • /Daria/3_2nd_level_fmri_swe/gb_build_runs.m
  • /Daria/3_2nd_level_fmri_swe/gb_config.m
  • /Daria/3_2nd_level_fmri_swe/gb_mkbatch.m
  • /Daria/3_2nd_level_fmri_swe/gb_process_runs.m
  • /Daria/3_2nd_level_fmri_swe/gb_spm2csv.m
  • /Daria/3_2nd_level_fmri_swe/gb_swe_action.m
  • /Daria/3_2nd_level_fmri_swe/visualize_results.sh
  • /Daria/3_2nd_level_fmri_swe/visualize_results_nilearn.py
  • /Daria/2_1st_level_task_fMRI/memory/functions/reshape_sub_logfiles.m
  • /Daria/2_1st_level_task_fMRI/memory/functions/selectfields.m
  • /Daria/2_1st_level_task_fMRI/memory/functions/tsv_read.m
  • /Daria/2_1st_level_task_fMRI/memory/pilot_analysis/.Rhistory
  • /Daria/2_1st_level_task_fMRI/memory/pilot_analysis/first_level.m
  • /Daria/2_1st_level_task_fMRI/memory/pilot_analysis/first_level_job.m
  • /Daria/2_1st_level_task_fMRI/memory/pilot_analysis/first_level_job_encoding.asv
  • /Daria/2_1st_level_task_fMRI/memory/pilot_analysis/first_level_job_encoding.m
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_desc-aparcaseg_dseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_desc-aseg_dseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_desc-brain_mask.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_desc-preproc_T1w.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_dseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_from-T1w_to-fsnative_mode-image_xfm.txt
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-L_inflated.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-L_midthickness.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-L_pial.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-L_smoothwm.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-R_inflated.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-R_midthickness.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-R_pial.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_hemi-R_smoothwm.surf.gii
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_label-CSF_probseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_label-GM_probseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_label-WM_probseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_space-MNI152NLin2009cAsym_dseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
  • /Daria/example_data/fmriprep_sub-01/anat/sub-01_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_A.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_LTM.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_encoding.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_encoding_fibre.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_encoding_kcal.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_encoding_wanting.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_fibre.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_kcal.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_memoryRecall.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_memoryRecall_OldSimNew.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_memoryRecall_hitmiss.m
  • /Daria/2_1st_level_task_fMRI/memory/matlabbatch_model_memoryWanting.m
  • /Daria/2_1st_level_task_fMRI/memory/old_fmri_extract_infos_memory.R
  • /Daria/2_1st_level_task_fMRI/memory/summary_missed_items.csv
  • /Daria/2_1st_level_task_fMRI/.Rhistory
  • /Daria/2_1st_level_task_fMRI/fmri_extraction_logfiles_memory.R
  • /Daria/2_1st_level_task_fMRI/fmri_extraction_logfiles_wanting.R
  • /Daria/2_1st_level_task_fMRI/fmri_movement_data.R
  • /Daria/example_data/BIDS_sub-01/ses-01/anat/sub-01_ses-01_T1w.json
  • /Daria/example_data/BIDS_sub-01/ses-01/anat/sub-01_ses-01_T1w.nii
  • /Daria/example_data/BIDS_sub-01/ses-01/dwi/.Rhistory
  • /Daria/example_data/BIDS_sub-01/ses-01/dwi/sub-01_ses-01_dwi.bval
  • /Daria/example_data/BIDS_sub-01/ses-01/dwi/sub-01_ses-01_dwi.bvec
  • /Daria/example_data/BIDS_sub-01/ses-01/dwi/sub-01_ses-01_dwi.json
  • /Daria/example_data/BIDS_sub-01/ses-01/dwi/sub-01_ses-01_dwi.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-dwi_dir-AP_epi.json
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-dwi_dir-AP_epi.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-dwi_dir-PA_epi.json
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-dwi_dir-PA_epi.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-memory_magnitude1.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-memory_magnitude2.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-memory_phasediff.json
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  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-wanting_magnitude1.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-wanting_magnitude2.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-01/fmap/sub-01_ses-01_acq-wanting_phasediff.json
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  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-memory_bold.json
  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-memory_bold.nii
  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-memory_events.json
  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-memory_events.tsv
  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-wanting_bold.json
  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-wanting_bold.nii
  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-wanting_events.json
  • /Daria/example_data/BIDS_sub-01/ses-01/func/sub-01_ses-01_task-wanting_events.tsv
  • /Daria/example_data/BIDS_sub-01/ses-02/anat/sub-01_ses-02_T1w.json
  • /Daria/example_data/BIDS_sub-01/ses-02/anat/sub-01_ses-02_T1w.nii
  • /Daria/example_data/BIDS_sub-01/ses-02/dwi/sub-01_ses-02_dwi.bval
  • /Daria/example_data/BIDS_sub-01/ses-02/dwi/sub-01_ses-02_dwi.bvec
  • /Daria/example_data/BIDS_sub-01/ses-02/dwi/sub-01_ses-02_dwi.json
  • /Daria/example_data/BIDS_sub-01/ses-02/dwi/sub-01_ses-02_dwi.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-02/fmap/sub-01_ses-02_acq-dwi_dir-AP_epi.json
  • /Daria/example_data/BIDS_sub-01/ses-02/fmap/sub-01_ses-02_acq-dwi_dir-AP_epi.nii.gz
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  • /Daria/example_data/BIDS_sub-01/ses-02/fmap/sub-01_ses-02_acq-memory_magnitude1.nii.gz
  • /Daria/example_data/BIDS_sub-01/ses-02/fmap/sub-01_ses-02_acq-memory_magnitude2.nii.gz
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  • /Daria/example_data/BIDS_sub-01/ses-03/anat/sub-01_ses-03_T1w.json
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  • /Daria/example_data/fmriprep_sub-01/ses-01/func/sub-01_ses-01_task-wanting_desc-confounds_regressors.tsv
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  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/con_0005.nii
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/contrast_001.tif
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/contrast_002.tif
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/contrast_003.tif
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/contrast_004.tif
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/contrast_005.tif
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/mask.nii
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/motion_reg.txt
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/spmT_0001.nii
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/spmT_0002.nii
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/spmT_0003.nii
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/spmT_0004.nii
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/spmT_0005.nii
  • /Daria/example_results/1st_level/modelA/sub-01/ses-01/spm_2023Jun23.ps
  • /Daria/example_results/1st_level/modelA/Daria_22062023_ModelA.jpg
  • /Daria/example_results/1st_level/modelA/Daria_22062023_ModelA_contrast2.jpg
  • /Daria/README_EXAMPLESUB
  • /Daria/how_to_start_spm12

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