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Created with Raphaël 2.2.013Mar15Sep16May17Apr27Feb31Oct29829Aug2113Jul428Mar21Jan1413126Dec16Nov2120Apr14Oct1222Jul15Jun12319May30Apr9Mar28Jan419Dec26Nov28Oct1511109721Sep201713Aug29Jul243128Jun272119181614121165328May272625242322212017161514131098764330Apr2926252423181716151211109854331Mar2827262522212019Merge branch 'improve-checkFresnelNum' into 'master'mastermastercheckFresnelNumber: fixed error messageMerge branch 'paganin-astigmatism' into 'master'implement astigmatism for Paganin/smocheckFresnelNumber: set default periods to 10Automatically adjust plot range for `checkFresnelNumbers`Merge branch 'update-readme' into 'master'Add small contribution guideChange from ssh clone to (public) https clone.Merge branch 'h5save' into 'master'Add `h5save` function.NEW: function to reduce flatfield-correction-errors for objects with bounded supportsimulatedHologram: raise warnings instead of errors in case of negative phase- and/or absorption-valuesMinor fix in reprojectionAlignmentMerge branch 'master' of gitlab.gwdg.de:irp/holotomotoolboxNEW: function that corrects misalignment in tomographic projections (due to undesired object motions during data acquistion) by an iterative reprojection-algorithmAdded a function that computes a combined image-transformation that translates two subsequent shift-rotations of an image to a single-step-operation. This is useful in order not to deteriorate image-quality by repeated interpolations.FIX: add missing ... in multi-line expressionCLEANUP: remove debug codeLet imgaussfilt handle 3d- or 4d-arrays in Octave analogously as in the Matlab implementation: the arrays are interpreted as stacks of 2d-images, where the filtering is applied to each image separatelycropToCenter: if newSize has less dimensions than size(in), then crop only along dimensions specified by newSizeMake cropToCenter work for arrays of arbitrary dimensionMerge branch 'master' of gitlab.gwdg.de:irp/holotomotoolboxFix Octave-version of imgaussfilt so that 1d-signals are properly handledcorrect frequency grid in fscFIX: make padFadeout work with default settings when no padding is applied along some dimensionsMerge branch 'master' of gitlab.gwdg.de:irp/holotomotoolboxphaserec_nonlinTikhonov: allow to manually set initial guess. If no initial guess is assigned, a ctf-reconstruction is used by default (as before)phaserec_nonlinTikhonov: improve status messages of optimization method in verbose-mode (settings.optimization.verbose == true)Merge branch 'fix-NormSqFunctional' into 'master'adapt parameters for mg wire exabpleexample script and data of a magnesium wire measured at PETRA III, P05 nano. This is the supplement for the paper 'A phase retrieval framework to directly reconstruct the projected refractive index''useful functions for figure windowadapted scripts to new algorithm interfaceadded algorithm and projectors for refractive phase retrievaladdColorbarlabel: option to choose cut offoption to choose data type when saving tiffssmall fixes to cropping/padding functionshelper tool for figures: addToolsToToolbar. adds a crop and autoContrastbutton to figuresaddScalebar: option to adjust offset between bar and label