Updated ci reqs; Updated vignette

.ci/requirements.txt

 r-assertive.sets
 r-base
+bioconductor-biocstyle
+r-htmltools
 r-flexdashboard
 r-knitr
+r-magrittr
 r-yaml
 zip
\ No newline at end of file

vignettes/i2dash-intro.Rmd

@@ -51,7 +51,7 @@ The R package i2dash provides classes and functionality to programatically creat
 
 ## Installation
 
-The package can be installed with the `r CRANpkg("remotes")` library:
+The package can be installed with the `r BiocStyle::BiocStyle::CRANpkg("remotes")` library:
 
 ```{r, eval=FALSE}
 remotes::install_git(url = "https://gitlab.gwdg.de/loosolab/software/i2dash.git", repos = BiocManager::repositories())
@@ -142,7 +142,7 @@ We can remove a page using the `remove_page()` function. The `page` argument con
 
 ```{r, eval = FALSE}
 dashboard %<>%
-  i2dash::remove_page(page = "page2")
+  remove_page(page = "page2")
 ```
 
 ## Adding content
@@ -218,7 +218,7 @@ Lets assume we have an experimental factor called year:
 year <- factor(c(2014, 2014, 2015, 2017, 2019, 2019), levels = c(2014:2021))
 ```
 
-To assign each level a color from the [sequential greens](http://colorbrewer2.org/#type=sequential&scheme=BuGn&n=9) palette from the `r CRANpkg("RColorBrewer")` package, we create a character vector with the colors and assign the levels as names.
+To assign each level a color from the [sequential greens](http://colorbrewer2.org/#type=sequential&scheme=BuGn&n=9) palette from the `r BiocStyle::CRANpkg("RColorBrewer")` package, we create a character vector with the colors and assign the levels as names.
 
 ```{r, eval = FALSE}
 colors <- RColorBrewer::brewer.pal(8, "BuGn")
@@ -239,11 +239,10 @@ At any point in time, and particular when data analysis is finished, the `assemb
 
 ```{r, eval = FALSE}
 dashboard %>%
-i2dash::assemble(
-  pages = c("page1", "page3", "page4"))
+  assemble(pages = c("page1", "page3", "page4"))
 ```
 
-The resulting R Markdown file can be run with `r CRANpkg("Shiny")` or rendered with `r CRANpkg("rmarkdown")`.
+The resulting R Markdown file can be run with `r BiocStyle::CRANpkg("Shiny")` or rendered with `r BiocStyle::CRANpkg("rmarkdown")`.
 
 # Session Info {.unnumbered}