Merge branch 'pkgdown' into 'master'

pkgdown

See merge request !37

README.md

@@ -34,7 +34,7 @@ install.packages("i2dash")
 
 It is possible to extend the core functionality of **i2dash** with templates for components and pre-defined pages. This enables to provide an enhanced user interactivity e.g. dynamic change of plot settings. Further, extensions allow an easier integration of complex calculations and data manipulation, hidden behind functions.
 
-- [**i2dash.scrnaseq**](https://loosolab/gitlab.gwdg.io/i2dash.scrnaseq/) enables an enhanced user interactivity and contains simple but effective tools for the creation of an i2dashboard with focus on single-cell RNA-sequencing data visualization and exploration.
+- [**i2dash.scrnaseq**](https://loosolab.github.io/i2dash.scrnaseq/) enables an enhanced user interactivity and contains simple but effective tools for the creation of an i2dashboard with focus on single-cell RNA-sequencing data visualization and exploration.
 
 ## Run i2dash using Docker
 

docs/404.html

@@ -103,6 +103,9 @@
     <li>
       <a href="articles/i2dash-intro.html">Creating iterative and interactive dashboards with i2dash</a>
     </li>
+    <li>
+      <a href="articles/i2dash-extension.html">Creating an extension package for i2dash</a>
+    </li>
   </ul>
 </li>
       </ul>

docs/LICENSE-text.html

@@ -103,6 +103,9 @@
     <li>
       <a href="articles/i2dash-intro.html">Creating iterative and interactive dashboards with i2dash</a>
     </li>
+    <li>
+      <a href="articles/i2dash-extension.html">Creating an extension package for i2dash</a>
+    </li>
   </ul>
 </li>
       </ul>

docs/LICENSE.html

@@ -103,6 +103,9 @@
     <li>
       <a href="articles/i2dash-intro.html">Creating iterative and interactive dashboards with i2dash</a>
     </li>
+    <li>
+      <a href="articles/i2dash-extension.html">Creating an extension package for i2dash</a>
+    </li>
   </ul>
 </li>
       </ul>

docs/articles/i2dash-extension_files/accessible-code-block-0.0.1/empty-anchor.js

+// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
+// v0.0.1
+// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
+
+document.addEventListener('DOMContentLoaded', function() {
+  const codeList = document.getElementsByClassName("sourceCode");
+  for (var i = 0; i < codeList.length; i++) {
+    var linkList = codeList[i].getElementsByTagName('a');
+    for (var j = 0; j < linkList.length; j++) {
+      if (linkList[j].innerHTML === "") {
+        linkList[j].setAttribute('aria-hidden', 'true');
+      }
+    }
+  }
+});

docs/articles/i2dash-extension_files/anchor-sections-1.0/anchor-sections.css

+/* Styles for section anchors */
+a.anchor-section {margin-left: 10px; visibility: hidden; color: inherit;}
+a.anchor-section::before {content: '#';}
+.hasAnchor:hover a.anchor-section {visibility: visible;}

docs/articles/i2dash-extension_files/anchor-sections-1.0/anchor-sections.js

+// Anchor sections v1.0 written by Atsushi Yasumoto on Oct 3rd, 2020.
+document.addEventListener('DOMContentLoaded', function() {
+  // Do nothing if AnchorJS is used
+  if (typeof window.anchors === 'object' && anchors.hasOwnProperty('hasAnchorJSLink')) {
+    return;
+  }
+
+  const h = document.querySelectorAll('h1, h2, h3, h4, h5, h6');
+
+  // Do nothing if sections are already anchored
+  if (Array.from(h).some(x => x.classList.contains('hasAnchor'))) {
+    return null;
+  }
+
+  // Use section id when pandoc runs with --section-divs
+  const section_id = function(x) {
+    return ((x.classList.contains('section') || (x.tagName === 'SECTION'))
+            ? x.id : '');
+  };
+
+  // Add anchors
+  h.forEach(function(x) {
+    const id = x.id || section_id(x.parentElement);
+    if (id === '') {
+      return null;
+    }
+    let anchor = document.createElement('a');
+    anchor.href = '#' + id;
+    anchor.classList = ['anchor-section'];
+    x.classList.add('hasAnchor');
+    x.appendChild(anchor);
+  });
+});