Skip to content
Snippets Groups Projects
Commit f957f129 authored by jens.preussner's avatar jens.preussner :ghost:
Browse files

Fixed URI in inst/CITATION; rebuild site

parent 4c1eb57f
Branches
Tags
No related merge requests found
Pipeline #132312 canceled
Stage: build
Stage: check
Hide whitespace changes
Inline Side-by-side
Showing
with 189 additions and 43 deletions
docs/LICENSE-text.html
+ 2
− 21
View file @ f957f129
......@@ -124,27 +124,8 @@
<h1>License</h1>
</div>
<pre>MIT License
Copyright (c) 2019 Mario Looso, Jens Preussner and Arsenij Ustjanzew
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
<pre>YEAR: 2020
COPYRIGHT HOLDER: Mario Looso, Jens Preussner, Arsenij Ustjanzew
</pre>
</div>
......
docs/LICENSE.html 0 → 100644
+ 165
− 0
View file @ f957f129
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>MIT License • i2dash</title>
<!-- favicons -->
<link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png">
<link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png">
<link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png" />
<link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png" />
<link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png" />
<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png" />
<!-- jquery -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
<!-- Bootstrap -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/css/bootstrap.min.css" integrity="sha256-bZLfwXAP04zRMK2BjiO8iu9pf4FbLqX6zitd+tIvLhE=" crossorigin="anonymous" />
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
<!-- bootstrap-toc -->
<link rel="stylesheet" href="bootstrap-toc.css">
<script src="bootstrap-toc.js"></script>
<!-- Font Awesome icons -->
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
<!-- clipboard.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
<!-- headroom.js -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
<!-- pkgdown -->
<link href="pkgdown.css" rel="stylesheet">
<script src="pkgdown.js"></script>
<meta property="og:title" content="MIT License" />
<!-- mathjax -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body data-spy="scroll" data-target="#toc">
<div class="container template-title-body">
<header>
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">i2dash</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.2</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">
<span class="fas fa fas fa-home fa-lg"></span>
</a>
</li>
<li>
<a href="reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
Articles
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="articles/i2dash-intro.html">Creating iterative and interactive dashboards with i2dash</a>
</li>
</ul>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
</header>
<div class="row">
<div class="contents col-md-9">
<div class="page-header">
<h1>MIT License</h1>
</div>
<div id="mit-license" class="section level1">
<p>Copyright (c) 2020 Mario Looso, Jens Preussner, Arsenij Ustjanzew</p>
<p>Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:</p>
<p>The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.</p>
<p>THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.</p>
</div>
</div>
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
<nav id="toc" data-toggle="toc" class="sticky-top">
<h2 data-toc-skip>Contents</h2>
</nav>
</div>
</div>
<footer>
<div class="copyright">
<p>Developed by Arsenij Ustjanzew, Jens Preussner, Mario Looso.</p>
</div>
<div class="pkgdown">
<p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p>
</div>
</footer>
</div>
</body>
</html>
docs/articles/i2dash-intro.html
+ 3
− 3
View file @ f957f129
......@@ -88,7 +88,7 @@
<a class="author_email" href="mailto:#"></a><a href="mailto:arsenij.ustjanzew@mpi-bn.mpg.de" class="email">arsenij.ustjanzew@mpi-bn.mpg.de</a>
<h4 class="date">22 April 2020</h4>
<h4 class="date">24 April 2020</h4>
<div class="hidden name"><code>i2dash-intro.Rmd</code></div>
......@@ -97,7 +97,7 @@
<p>Vignette last complied on 2020-04-22. i2dash is licenced under MIT + file LICENSE.</p>
<p>Vignette last complied on 2020-04-24. i2dash is licenced under MIT + file LICENSE.</p>
<p><img src="images/i2dash_logo.png" align="center" width="150px"></p>
<div id="introduction-and-scope" class="section level1">
<h1 class="hasAnchor">
......@@ -327,7 +327,7 @@ Figure 5: The resulting page with two linked components.
<p>At any point in time, and particular when data analysis is finished, the <code>assemble</code> function can be used to generate representation of the dashboard in R markdown format. Using the <code>pages</code> parameter, we can define which pages will be included in the output.</p>
<div class="sourceCode" id="cb19"><html><body><pre class="r"><span class="no">dashboard</span> <span class="kw">%&gt;%</span>
<span class="fu"><a href="../reference/assemble.html">assemble</a></span>(<span class="kw">pages</span> <span class="kw">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html">c</a></span>(<span class="st">"page1"</span>, <span class="st">"page3"</span>, <span class="st">"page4"</span>, <span class="st">"page5"</span>))</pre></body></html></div>
<p>The resulting R Markdown file can be run with <em><a href="https://CRAN.R-project.org/package=Shiny">Shiny</a></em> or rendered with <em><a href="https://CRAN.R-project.org/package=rmarkdown">rmarkdown</a></em>.</p>
<p>The resulting R Markdown file can be run with <em><a href="https://CRAN.R-project.org/package=shiny">shiny</a></em> or rendered with <em><a href="https://CRAN.R-project.org/package=rmarkdown">rmarkdown</a></em>.</p>
</div>
</div>
<div id="session-info" class="section level1 unnumbered">
......
docs/authors.html
+ 1
− 2
View file @ f957f129
......@@ -125,7 +125,7 @@
</div>
<p>Ustjanzew A., Preussner J., Bentsen M., Kuenne C., and Looso M. i2dash: creation of flexible, interactive and web-based dashboards from data analysis pipelines. tba URL tba</p>
<p>Ustjanzew A., Preussner J., Bentsen M., Kuenne C., and Looso M. i2dash: creation of flexible, interactive and web-based dashboards from data analysis pipelines.</p>
<pre>@Article{,
title = {i2dash: creation of flexible, interactive and web-based dashboards from data analysis pipelines},
author = {Arsenij Ustjanzew and Jens Preussner and Mette Bentsen and Carsten Kuenne and Mario Looso},
......@@ -134,7 +134,6 @@
volume = {40},
number = {3},
pages = {1--25},
url = {tba},
}</pre>
<div class="page-header">
......
docs/index.html
+ 2
− 3
View file @ f957f129
......@@ -126,9 +126,8 @@
<div class="license">
<h2>License</h2>
<ul class="list-unstyled">
<li>
<a href="https://opensource.org/licenses/mit-license.php">MIT</a> + file <a href="LICENSE-text.html">LICENSE</a>
</li>
<li><a href="LICENSE.html">Full license</a></li>
<li><small><a href="https://opensource.org/licenses/mit-license.php">MIT</a> + file <a href="LICENSE-text.html">LICENSE</a></small></li>
</ul>
</div>
<div class="citation">
......
docs/pkgdown.yml
+ 1
− 1
View file @ f957f129
......@@ -3,5 +3,5 @@ pkgdown: 1.5.1
pkgdown_sha: ~
articles:
i2dash-intro: i2dash-intro.html
last_built: 2020-04-22T09:30Z
last_built: 2020-04-24T06:50Z
docs/reference/i2dashboard-class.html
+ 1
− 1
View file @ f957f129
......@@ -184,7 +184,7 @@
<dt><code>source</code></dt><dd><p>Either a logical value describing whether the source code should be embeded through an item in the navigation bar or a link to a URL where the source code can be found online.</p></dd>
<dt><code>social</code></dt><dd><p>A vector with any number of the following services: “facebook”, “twitter”, “google-plus”, “linkedin”, and “pinterest”. You can also specify “menu” to provide a generic sharing drop-down menu that includes all of the services.</p></dd>
<dt><code>share</code></dt><dd><p>A vector with any number of the following services: “facebook”, “twitter”, “google-plus”, “linkedin”, and “pinterest”. You can also specify “menu” to provide a generic sharing drop-down menu that includes all of the services.</p></dd>
<dt><code>navbar</code></dt><dd><p>A list of links in the navigation bar (see the <a href='https://rmarkdown.rstudio.com/flexdashboard/using.html#navigation_bar'>documentation of flexdashboard</a>).</p></dd>
......
docs/reference/i2dashboard-content.html
+ 1
− 1
View file @ f957f129
......@@ -151,7 +151,7 @@
<span class='co'># S4 method for i2dashboard,gt_tbl</span>
<span class='fu'>add_component</span>(<span class='no'>dashboard</span>, <span class='no'>component</span>, <span class='kw'>page</span> <span class='kw'>=</span> <span class='st'>"default"</span>, <span class='no'>...</span>)
<span class='co'># S4 method for i2dashboard,knitr_kable</span>
<span class='co'># S4 method for i2dashboard,kableExtra</span>
<span class='fu'>add_component</span>(<span class='no'>dashboard</span>, <span class='no'>component</span>, <span class='kw'>page</span> <span class='kw'>=</span> <span class='st'>"default"</span>, <span class='no'>...</span>)
<span class='co'># S4 method for i2dashboard,Heatmap</span>
......
docs/reference/i2dashboard-methods.html
+ 4
− 4
View file @ f957f129
......@@ -151,9 +151,9 @@
<span class='fu'>datadir</span>(<span class='no'>dashboard</span>) <span class='kw'>&lt;-</span> <span class='no'>value</span>
<span class='fu'>social_links</span>(<span class='no'>dashboard</span>)
<span class='fu'>share</span>(<span class='no'>dashboard</span>)
<span class='fu'>social_links</span>(<span class='no'>dashboard</span>) <span class='kw'>&lt;-</span> <span class='no'>value</span>
<span class='fu'>share</span>(<span class='no'>dashboard</span>) <span class='kw'>&lt;-</span> <span class='no'>value</span>
<span class='fu'>embed_source</span>(<span class='no'>dashboard</span>) <span class='kw'>&lt;-</span> <span class='no'>value</span>
......@@ -192,10 +192,10 @@
<span class='fu'>datadir</span>(<span class='no'>dashboard</span>) <span class='kw'>&lt;-</span> <span class='no'>value</span>
<span class='co'># S4 method for i2dashboard</span>
<span class='fu'>social_links</span>(<span class='no'>dashboard</span>)
<span class='fu'>share</span>(<span class='no'>dashboard</span>)
<span class='co'># S4 method for i2dashboard</span>
<span class='fu'>social_links</span>(<span class='no'>dashboard</span>) <span class='kw'>&lt;-</span> <span class='no'>value</span>
<span class='fu'>share</span>(<span class='no'>dashboard</span>) <span class='kw'>&lt;-</span> <span class='no'>value</span>
<span class='co'># S4 method for i2dashboard</span>
<span class='fu'>source</span>(<span class='no'>dashboard</span>)
......
docs/reference/index.html
+ 1
− 1
View file @ f957f129
......@@ -178,7 +178,7 @@
<tr>
<td>
<p><code><a href="i2dashboard-methods.html">interactivity()</a></code> <code><a href="i2dashboard-methods.html">`interactivity&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">title()</a></code> <code><a href="i2dashboard-methods.html">`title&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">author()</a></code> <code><a href="i2dashboard-methods.html">`author&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">theme()</a></code> <code><a href="i2dashboard-methods.html">`theme&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">datadir()</a></code> <code><a href="i2dashboard-methods.html">`datadir&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">social_links()</a></code> <code><a href="i2dashboard-methods.html">`social_links&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">`embed_source&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">source()</a></code> <code><a href="i2dashboard-methods.html">`source&lt;-`()</a></code> </p>
<p><code><a href="i2dashboard-methods.html">interactivity()</a></code> <code><a href="i2dashboard-methods.html">`interactivity&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">title()</a></code> <code><a href="i2dashboard-methods.html">`title&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">author()</a></code> <code><a href="i2dashboard-methods.html">`author&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">theme()</a></code> <code><a href="i2dashboard-methods.html">`theme&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">datadir()</a></code> <code><a href="i2dashboard-methods.html">`datadir&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">share()</a></code> <code><a href="i2dashboard-methods.html">`share&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">`embed_source&lt;-`()</a></code> <code><a href="i2dashboard-methods.html">source()</a></code> <code><a href="i2dashboard-methods.html">`source&lt;-`()</a></code> </p>
</td>
<td><p>Accessor methods for slots of an i2dashboard object.</p></td>
</tr>
......
docs/reference/render_image.html
+ 6
− 1
View file @ f957f129
......@@ -137,7 +137,8 @@
<span class='kw'>title</span> <span class='kw'>=</span> <span class='kw'>NULL</span>,
<span class='kw'>raw</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
<span class='kw'>width</span> <span class='kw'>=</span> <span class='st'>"100%"</span>,
<span class='kw'>height</span> <span class='kw'>=</span> <span class='st'>"auto"</span>
<span class='kw'>height</span> <span class='kw'>=</span> <span class='st'>"auto"</span>,
<span class='kw'>in_component</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>
)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
......@@ -167,6 +168,10 @@
<th>height</th>
<td><p>Height defined with CSS in the HTML img-tag.</p></td>
</tr>
<tr>
<th>in_component</th>
<td><p>Whether the image belongs to a component or the sidebar</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
......
inst/CITATION
+ 1
− 4
View file @ f957f129
......@@ -12,11 +12,8 @@ citEntry(entry = "Article",
volume = "40",
number = "3",
pages = "1--25",
url = "tba",
textVersion =
paste("Ustjanzew A., Preussner J., Bentsen M., Kuenne C., and Looso M.",
"i2dash: creation of flexible, interactive and web-based dashboards from data analysis pipelines.",
"tba",
"URL tba")
"i2dash: creation of flexible, interactive and web-based dashboards from data analysis pipelines.")
)
\ No newline at end of file
vignettes/i2dash-intro.Rmd
+ 1
− 1
View file @ f957f129
......@@ -322,7 +322,7 @@ dashboard %>%
assemble(pages = c("page1", "page3", "page4", "page5"))
```
The resulting R Markdown file can be run with `r BiocStyle::CRANpkg("Shiny")` or rendered with `r BiocStyle::CRANpkg("rmarkdown")`.
The resulting R Markdown file can be run with `r BiocStyle::CRANpkg("shiny")` or rendered with `r BiocStyle::CRANpkg("rmarkdown")`.
# Session Info {.unnumbered}
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment