Test for from_single_mtx (!21) · Merge requests · loosolab / software / sc_framework

Mette Bentsen requested to merge testing-mette into dev Jun 29, 2022

The merge request for https://gitlab.gwdg.de/loosolab/software/loosolab_sc_rna_framework/-/issues/14.

I restructured the code within assemblers, such that we now have "from_quant", which calls "from_single_starsolo" per sample. Internally "from_single_starsolo" calls "from_single_mtx" to assemble the anndata object.

Preliminarily, the "from_single_mtx" is tested using the data in the new "data" dir, containing any data used for unit testing.

Test for from_single_mtx

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