Please refer to the documentation of transmart-batch on how to set-up and upload your data. Your data will be automatically uploaded if you zip a full transmart-batch structure ([example](https://github.com/thehyve/transmart-batch/tree/master/studies/GSE20690)) as "STUDYID.zip" (where STUDYID is the actual ID) and copy it directly into the named docker volumne "tm_opt" from your host system to the folder. This folder can noramly be found at:
Please refer to the documentation of transmart-batch on how to set-up and upload your data. Your data will be automatically uploaded if you zip a full transmart-batch structure ([example](https://github.com/thehyve/transmart-batch/tree/master/studies/GSE20690)) as "STUDYID.zip" (where STUDYID is the actual ID) and copy it directly into the named docker volumne "tm_opt" from your host system to the folder. This folder can normally be found at:
If you have a study prepared in a suitable format you can use the `tmbatch` container to load this as well. There is a manual describing the file formats available on [GitHub](https://github.com/thehyve/transmart-batch), under the 'docs' section. The following tutorial will show you how to load clinical data.