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- alignment script ([ImageJ](https://imagej.net/software/fiji/) macro file), [here](https://gitlab.gwdg.de/mnieter1/autobusted/-/tree/master/Image%20Alignment)
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- recipe to create masks with [Inkscape](https://inkscape.org/) (e.g. well covers or manual bubble references); recorded as a video capture found [here](https://gitlab.gwdg.de/mnieter1/autobusted/-/tree/master/Inkscape).
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- "blue" stain version of the KNIME pipeline, using adaptive local thresholding and filtering by size and circularity, can be found [here](https://gitlab.gwdg.de/mnieter1/autobusted/-/tree/master/KNIME%20workflows)
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- examples files can be found [here](https://gitlab.gwdg.de/mnieter1/autobusted/-/tree/master/example_files)
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- examples files [here](https://gitlab.gwdg.de/mnieter1/autobusted/-/tree/master/example_files)
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Coming up soon will be
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- more analysis pipelines and cohort collection scripts
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... | ... | @@ -13,4 +13,4 @@ Coming up soon will be |
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Work in progress
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- robust automated well edge detection
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The same goes for potential hardware to use: we have a working setup that we want to develop further and like to share. Thus developing it for and with the community. |
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The same goes for potential hardware to use: we have a working setup, which was described [here](https://doi.org/10.1016/j.jcf.2021.10.005) that we want to develop further and like to share. Thus developing it for and with the community. |
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