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mpievolbio-it
CRBHits
Commits
a2076073
Commit
a2076073
authored
9 months ago
by
Kristian Ullrich
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# gitlab.ci
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8 months ago
Stage: deploy
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a2076073
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@@ -2,7 +2,7 @@ image: rocker/r-devel:latest
before_script
:
-
apt-get update
-
apt-get -y install
libcurl4-openssl-dev libssl-dev libxml2-dev libglu1-mesa-dev libssh2-1-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libgit2-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
pandoc r-cran-devtools r-cran-testthat r-cran-curl r-bioc-biostrings
-
apt-get -y install pandoc r-cran-devtools r-cran-testthat r-cran-curl r-bioc-biostrings
-
R -e "dir(); getwd(); sessionInfo(); install.packages('pkgdown'); devtools::install()"
-
R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip last-1542.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/last-1542/')); system('make')"
-
R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('tar -xvf KaKs_Calculator2.0_src.tar.gz')); setwd(paste0(find.package('CRBHits'), '/extdata/KaKs_Calculator2.0_src/src/')); system('make clean'); system('make')"
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