Handle case simNetwork.size() =1
Run: http://rarefan.evolbio.mpg.de/results?run_id=uopc36dp The job terminates with:
Wrong letter in DNA sequence: N
Wrong letter in DNA sequence: N
CGCGCTCGCGAAGAGCGCGAC
Calculating Results.
legacy_blast.pl blastall -p tblastn -m 8 -o /home/cloud/repinpop/app/static/uploads/uopc36dp/out/blastout/NZ_CP043305.1_RagTag.fna.blast -i /home/cloud/repinpop/app/static/uploads/uopc36dp/yafM_Ecoli.faa -e 1.0E-30 -d /home/cloud/repinpop/app/static/uploads/uopc36dp/NZ_CP043305.1_RagTag.fna -F F -b 50000000
Processing genome NZ_CP043305_0
Calculate word frequencies...
Write seed sequences...
Initialize index.../home/cloud/repinpop/app/static/uploads/uopc36dp/NZ_CP043305.1_RagTag.fna
Get all connected sequences...
Write occurrences...
Done.
Read REP seeds...
Calculate REP Positions...
Calculate REPINs...
Determine largest sequence cluster...
Working Directory = /home/cloud/repinpop/app/static/uploads/uopc36dp
mcl_command = mcl /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0_allSeed.nw -te 2 -I 1.2 --abc -o /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0.mcl
___ [mcxIOopen] r stream </home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0_allSeed.nw> cannae be opened
mcl /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0_allSeed.nw -te 2 -I 1.2 --abc -o /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0.mcl
mcl /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0_allSeed.nw -te 2 -I 1.2 --abc -o /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0.mcl
mcl /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0_allSeed.nw -te 2 -I 1.2 --abc -o /home/cloud/repinpop/app/static/uploads/uopc36dp/out/NZ_CP043305_0/NZ_CP043305_0.mcl was not successful!