Skip to content

Improvements to Part I

Sean Murray requested to merge faster_loading into master

significant speed up; switched to third-party tiff loader and writers; A big improvement also come from moving the frame index to the third position i.e. tif_stack(row,column,frame) not tif_stack(frame,row,column) This way each frame is contiguous in memory and makes alignment, etc step faster. It also matches better how tiff are stored. It also means most uses of squeeze are unnecessary e.g. mean_phase=mean(fov.phase,3) (no squeeze)

Merge request reports